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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCTACAAAGATGCTATGGGTGGTACCTTCCATAAAGGTATTCAATGTGATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGTgtaagaaatttatttcatgttaatgctcttatttaaaatttatttcatgttaatgctcttatttaataagattttctgataaacttattgttaaacctttgttctgaattctgtag

Basic information

species Vitis vinifera
transcript Vv17s0000g09280.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g09280.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G09210.1 (Glycine max), 5'ss of exon 4
GGAGCTACAAAGATGCTATGGGTGGTACCTTCCATAAAGGTATTCAATGTGATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGTgtaagaaatttatttcatgttaatgctcttatt-taaaatttatttcatgttaatgctcttatttaataagattttctgataaacttattgttaaacctttgttctgaattctgtag
  ||  |||  ||||| |||  |||||  |||||||| ||  | |  |||||||| ||||| ||  ||||||||||||||||||| ||||| || |||||||||| | ||| |||    |  ||    ||||  | |||||  ||||| |    |     |  | | |     ||| ||                                      
ATAGTCACACTGATGCAATGTCTGGTATGTTCCATAAGGGGGTCCGCTGTGATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGTgtaagtactttgttttgcttggat----ttatggtgaaattgttttcaggggcgtttcaatgataagttgtcctttgtgcag-----------------------------------

upper sequence: Vv17s0000g09280.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G02630.1 (Glycine max), 5'ss of exon 1
GGAGCTACAAAGATGCTATGGGTGGTACCTTCCATAAAGGTATTCAATGTGATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGTgtaagaaatttatttcatgttaatgctcttatt-taaaatttatttcatgttaatgctcttatttaataagattttctgataaacttattgttaaacctttgttctgaattctgtag
  ||  |||  ||||| |||  |||||  |||||||| ||  | |  |||||||| ||||| ||  ||||||||||||||||||| ||||| || |||||||||| | ||| |||    |  ||    ||||  | |||||  ||||| |  |||  | || | |  |    || |                                         
ATAGTCACACTGATGCAATGTCTGGTATGTTCCATAAGGGGGTCCGCTGTGATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGTgtaagtactttgttttgcttggat----ttatggtgaaattgttttcagggaaataattttttgtcct----ttgtgcag-------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110727900|gb|EE105187.1|EE105187
EST:     GATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGT                         AAAAGAAGATTATGACCTTTGCAGCATCTGCTTCTCTGATATGGGTAATGA
genomic: GATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGTgtaagaaatt ... aattctgtagAAAAGAAGATTATGACCTTTGCAGCATCTGCTTCTCTGATATGGGTAATGA
EST: gi|110376807|gb|EC941885.1|EC941885
EST:     GATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGT                         AAAAGAAGATTATGACCTTTGCAGCATCTGCTTCTCTGATATGGGTAATGA
genomic: GATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGTgtaagaaatt ... aattctgtagAAAAGAAGATTATGACCTTTGCAGCATCTGCTTCTCTGATATGGGTAATGA
EST: gi|110699168|gb|EE075929.1|EE075929
EST:     GATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGT                         AAAAGAAGATTATGACCTTTGCAGCATCTGCTTCTCTGATATGGGTAATGA
genomic: GATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGTgtaagaaatt ... aattctgtagAAAAGAAGATTATGACCTTTGCAGCATCTGCTTCTCTGATATGGGTAATGA
EST: gi|110377542|gb|EC942615.1|EC942615
EST:     GATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGT                         AAAAGAAGATTATGACCTTTGCAGCATCTGCTTCTCTGATATGGGTAATGA
genomic: GATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGTgtaagaaatt ... aattctgtagAAAAGAAGATTATGACCTTTGCAGCATCTGCTTCTCTGATATGGGTAATGA
EST: gi|110724176|gb|EE099776.1|EE099776
EST:     GATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGT                         AAAAGAAGATTATGACCTTTGCAGCATCTGCTTCTCTGATATGGGTAATGA
genomic: GATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGTgtaagaaatt ... aattctgtagAAAAGAAGATTATGACCTTTGCAGCATCTGCTTCTCTGATATGGGTAATGA
EST: gi|161720484|gb|FC070596.1|FC070596
EST:     GATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGT                         AAAAGAAGATTATGACCTTTGCAGCATCTGCTTCTCTGATATGGGTAATGA
genomic: GATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGTgtaagaaatt ... aattctgtagAAAAGAAGATTATGACCTTTGCAGCATCTGCTTCTCTGATATGGGTAATGA
EST: gi|110382256|gb|EC938988.1|EC938988
EST:     GATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGT                         AAAAGAAGATTATGACCTTTGCAGCATCTGCTTCTCTGATATGGGTAATGA
genomic: GATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGTgtaagaaatt ... aattctgtagAAAAGAAGATTATGACCTTTGCAGCATCTGCTTCTCTGATATGGGTAATGA
EST: gi|30125971|gb|CB911310.1|CB911310
EST:     GATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGT                         AAAAGAAGATTATGACCTTTGCAGCATCTGCTTCTCTGATATGGGTAATGA
genomic: GATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGTgtaagaaatt ... aattctgtagAAAAGAAGATTATGACCTTTGCAGCATCTGCTTCTCTGATATGGGTAATGA
EST: gi|110702298|gb|EE080854.1|EE080854
EST:     GATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGT                         AAAAGAAGATTATGACCTTTGCAGCATCTGCTTCTCTGATATGGGTAATGA
genomic: GATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGTgtaagaaatt ... aattctgtagAAAAGAAGATTATGACCTTTGCAGCATCTGCTTCTCTGATATGGGTAATGA