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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGTAGAGATTTAATTGGCATTGCCGAGACTGGCTCAGGGAAGACCTTGGCTTATTTGCTTCCAGCTTTGGTTCATGTTAGTGCACAGCCTCCATTAGgttagtattggttagcctttttccttataggttgcccccttagttgtctgatctttttttctttattcttttttcgttcttttataattattcag

Basic information

species Vitis vinifera
transcript Vv17s0000g09130.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g09130.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G09270.1 (Glycine max), 5'ss of exon 3
AAGGGTAGAGATTTAATTGGCATTGCCGAGACTGGCTCAGGGAAGACCTTGGCTTATTTGCTTCCAGCTTTGGTTCATGTTAGTGCACAGCCTCCATTAGgttagtattggttagcctt-tttccttataggttgcccccttagttgtctgatctttttttctttattcttttttcgttcttttataattattcag
|||||||||||||||||||||||||||||||||||||| || || || ||||| ||||||||||| ||||| || || || | |||||| |||| ||| |||  ||||||| |  ||||  |    | |  | |||    ||     | |  | |  | |  |   |   |||   | | ||| |           
AAGGGTAGAGATTTAATTGGCATTGCCGAGACTGGCTCGGGTAAAACTTTGGCGTATTTGCTTCCTGCTTTAGTGCACGTCAATGCACAACCTCGATTGGgtatgtattggattcccttgctaatctgtcagatgctatgtttaccttttattatggtatgatgggtgtgtttgctgctttttcag----------

upper sequence: Vv17s0000g09130.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G02590.1 (Glycine max), 5'ss of exon 3
AAGGGTAGAGATTTAATTGGCATTGCCGAGACTGGCTCAGGGAAGACCTTGGCTTATTTGCTTCCAGCTTTGGTTCATGTTAGTGCACAGCCTCCATTAGgttagtattggttagcctt-tttccttataggttgcccccttagttgtctgatctttttttctttattcttttttcgttcttttataattattcag
||||||||||| |||||||||||||| ||||||||||| || || || ||| | ||| ||||||| ||||| || ||||| | |||||| |||| ||| |||  ||||||| |  |||   |    | |  | |||    ||     | |  | |  | |  |  ||   |||   | | ||| |           
AAGGGTAGAGACTTAATTGGCATTGCTGAGACTGGCTCGGGTAAAACTTTGTCGTATCTGCTTCCTGCTTTAGTGCATGTCAATGCACAACCTCGATTGGgtatgtattggattccctggctaatctgtcagatgctatgtttacattttattatggtatgatggatgtgtttgctgctttttcag----------

upper sequence: Vv17s0000g09130.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G63120.1 (Arabidopsis thaliana), 5'ss of exon 3
AAGGGTAGAGATTTAATTGGCATTGCCGAGACTGGCTCAGGGAAGACCTTGGCTTATTTGCTTCCAGCTTTGGTTCATGTTAGTGCACAGCCTCCATTAGgttagtattg----gttagcctttttccttataggttgcccccttagttgtctgatctttttttctttattcttttttcgttcttttataattattcag
|||||||| ||||| ||||| ||||| ||||||||||| || ||||| |||||||| ||| | ||||| |||||||| ||||||||||| |||| ||||||| ||||||       ||     | | || ||        |  | | || || |     |||||  ||    || ||  | | |  ||||         
AAGGGTAGGGATTTGATTGGTATTGCTGAGACTGGCTCTGGTAAGACATTGGCTTACTTGTTACCAGCATTGGTTCACGTTAGTGCACAACCTCGATTAGgtgagtattacagcactatgtgatattctgatttaagctgcattcatttttccggcaacttttttatttgcattgttggggtgtaatatag--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294964313|gb|GW838116.1|GW838116
EST:     GGCTTATTTGCTTCCAGCTTTGGTTCATGTTAGTGCACAGCCTCCATTAG                         TTCGAGGTGAAGGTCCTATTGTGCTAG
genomic: GGCTTATTTGCTTCCAGCTTTGGTTCATGTTAGTGCACAGCCTCCATTAGgttagtattg ... aattattcagTTCGAGGTGAAGGTCCTATTGTGCTAG
EST: gi|161712720|gb|FC062292.1|FC062292
EST:     GGCTTATTTGCTTCCAGCTTTGGTTCATGTTAGTGCACAGCCTCCATTAG                         TTCGAGGTGAAGGTCCTATTGTGCTAGTGTTAGCACCTACAAGAGAATTGG
genomic: GGCTTATTTGCTTCCAGCTTTGGTTCATGTTAGTGCACAGCCTCCATTAGgttagtattg ... aattattcagTTCGAGGTGAAGGTCCTATTGTGCTAGTGTTAGCACCTACAAGAGAATTGG