1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGAGCAGCCCCCCTCCGCCGTCACCATCAACGCCATCGTCTATGGCCGTCACCAGCACAGAGATTAAAGATGACGGCGAAAGAGTGATCAATCTCGACCAgtaagtgtggctccgttttcattttccttcatgtaataatatcattaacacccctcagctctcaaatatatcactcacccccttaagattcctattgtat...
species | Vitis vinifera |
transcript | Vv17s0000g08990.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACCAGCACAGAGATTAAAGATGACGGCGAAAGAGTGATCAATCTCGACCA TGGGGATCCGACAATGTATGAGAGGTTTTGGCAACAAATGGGGGACATAACEST: gi|71862432|gb|DT011487.1|DT011487
genomic: ACCAGCACAGAGATTAAAGATGACGGCGAAAGAGTGATCAATCTCGACCAgtaagtgtgg ... tgatgcacagTGGGGATCCGACAATGTATGAGAGGTTTTGGCAACAAATGGGGGACATAAC
EST: ACCAGCACAGAGATTAAAGATGACGGCGAAAGAGTGATCAATCTCGACCA TGGGGATCCGACAATGTATGAGAGGTTTTGGCAACAAATGGGGGACATAAC
genomic: ACCAGCACAGAGATTAAAGATGACGGCGAAAGAGTGATCAATCTCGACCAgtaagtgtgg ... tgatgcacagTGGGGATCCGACAATGTATGAGAGGTTTTGGCAACAAATGGGGGACATAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGCAGCCCCCCTCCGCCGTCACCATCAACGCCATCGTCTATGGCCGTCACCAGCACAGAGATTAAAGATGACGGCGAAAGAGTGATCAATCTCGACCAgtaagtgtggctccgttttcattttccttcatgtaataatatcattaacacccctcagctctcaaatatatcactcacccccttaagattcctattgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccccc