1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AACCACAGAGAAAGATATTCTAAGAGCTAGTTCCATAAAAAGATTTGGAAGAAAATTAAGAAGAAATGTGAAGAGAGACTCAACAAGCAGTGATCATGAGgttggtatattgaaacagggagctctctttctatgagttctttgacaattcgttttctcaagaaggaaatgtctttcttactagttctagaaaatttacc...
species | Vitis vinifera |
transcript | Vv17s0000g08870.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAAAATTAAGAAGAAATGTGAAGAGAGACTCAACAAGCAGTGATCATGAG CATGCAGTTGTTTTTGTCATTGGAGATCANTATTATGGAGCCCAGGCCAGCEST: gi|56409096|gb|CX017348.1|CX017348
genomic: GAAAATTAAGAAGAAATGTGAAGAGAGACTCAACAAGCAGTGATCATGAGgttggtatat ... ttgcctgcagCATGCAGTTGTTTTTGTCAATGGAGATCAGTATTATGGAGCCAAGGCCAGC
EST: GAAAATTAAGAAGAAATGTGAAGAGAGACTCAACAAGCAGTGATCATGAG CATGCAGTTGTTTTTTGTCA-TGGAGATCAGTATTATGGAGCCAAGGCCAG
genomic: GAAAATTAAGAAGAAATGTGAAGAGAGACTCAACAAGCAGTGATCATGAGgttggtatat ... ttgcctgcagCATGCAGTTGTTTTT-GTCAATGGAGATCAGTATTATGGAGCCAAGGCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACCACAGAGAAAGATATTCTAAGAGCTAGTTCCATAAAAAGATTTGGAAGAAAATTAAGAAGAAATGTGAAGAGAGACTCAACAAGCAGTGATCATGAGgttggtatattgaaacagggagctctctttctatgagttctttgacaattcgttttctcaagaaggaaatgtctttcttactagttctagaaaatttacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tagaaaa