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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGGGGATGAGGGGGGATTTGCTCCCAATGTTCAGGATAATAGGGAGGGGTTGGTTCTGCTTATGGATGCAATTGAAAAGGCTGGTTACACAGGCAAGgtaggcgggttgttgcttttcttttcttttgcagtttgattttccttgcagcctttaaggactccaaataaatgatgcag

Basic information

species Vitis vinifera
transcript Vv17s0000g04540.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g04540.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G22780.1 (Glycine max), 5'ss of exon 4
TGTTGGGGATGAGGGGGGATTTGCTCCCAATGTTCAGGATAATAGGGAGGGGTTGGTTCTGCTTATGGATGCAATTGAAAAGGCTGGTTACACAGGCAAGgtaggcgggttgttgcttttcttttcttttgcagtttga--ttttccttgcagcctttaaggactccaaataaatgatgcag
|||||| ||||| || |||||||||||||||||||| ||||| ||||||||| | ||| | || |||||||| ||||| ||||||||||| || |||||||| || |     ||| || | || | ||    | |||||   ||  ||||      |   | | |  |||  |||| |||||
TGTTGGAGATGAAGGAGGATTTGCTCCCAATGTTCAAGATAACAGGGAGGGGCTTGTTTTACTCATGGATGCCATTGACAAGGCTGGTTATACTGGCAAGgtgggtgaagctttgattat-ttctgttgcataatttgaaaattcacttgtgctgatctggaaataaaaaacaatggtgcag

upper sequence: Vv17s0000g04540.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G24920.1 (Glycine max), 5'ss of exon 2
TGTTGGGGATGAGGGGGGATTTGCTCCCAATGTTCAGGATAATAGGGAGGGGTTGGTTCTGCTTATGGATGCAATTGAAAAGGCTGGTTACACAGGCAAGgtaggcgggttgttgcttttcttttcttttgcagtttgattttcc--ttgcagcctttaaggactccaaataaatgatgcag
|||||| ||||| || ||||||||||||| |||||| ||||| ||||||||||| ||| | ||  ||||||| ||||| ||||||||||| || |||||||| || |   | ||| || | || | ||    | ||||| | | |  |||      |   | | |  |||  |||| |||||
TGTTGGAGATGAAGGAGGATTTGCTCCCAGTGTTCAAGATAACAGGGAGGGGTTTGTTTTACTCGTGGATGCCATTGAGAAGGCTGGTTATACTGGCAAGgtgggtgaagttttgattat-ttctgttgcataatttgaatattcacttgtgctgatctggaaataaaaaacaatggtgcag

upper sequence: Vv17s0000g04540.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G23080.1 (Glycine max), 5'ss of exon 3
TGTTGGGGATGAGGGGGGATTTGCTCCCAATGTTCAGGATAATAGGGAGGGGTTGGTTCTGCTTATGGATGCAATTGAAAAGGCTGGTTACACAGGCAAGgtaggcgggttgttgcttttcttttcttttgcagtttgattttcc--ttgcagcctttaaggactccaaataaatgatgcag
|||||| ||||| || |||||||||||||||||||| ||||| ||||||||| | ||  | || |||||||| ||||| || |||||||| || |||||||| || |     ||| || | || | ||    | ||||| | | |  |||      |   | | |  |||  ||||  ||||
TGTTGGAGATGAAGGAGGATTTGCTCCCAATGTTCAAGATAACAGGGAGGGGCTTGTCTTACTCATGGATGCTATTGAGAAAGCTGGTTATACTGGCAAGgtgggtgatgctttgattat-ttctgttacataatttgaatattcacttgtgctgatctggaaataaaaaacaatggcgcag

upper sequence: Vv17s0000g04540.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G25390.1 (Glycine max), 5'ss of exon 4
TGTTGGGGATGAGGGGGGATTTGCTCCCAATGTTCAGGATAATAGGGAGGGGTTGGTTCTGCTTATGGATGCAATTGAAAAGGCTGGTTACACAGGCAAGgtaggcgggttgttgcttttcttttcttttgcagtttgat--tttccttgcagcctttaaggactccaaataaatgatgcag
   ||| ||||| || |||||||||||||||||||| ||||| ||| ||||  | ||| | || |||||||| ||||| ||||||||||| ||  ||||||| || |     ||| || | || | ||    | |||||   ||  ||||      |   | | |  ||| ||||| |||||
---TGGAGATGACGGAGGATTTGCTCCCAATGTTCAAGATAACAGG-AGGGTCTTGTTTTACTCATGGATGCCATTGAGAAGGCTGGTTATACTAGCAAGGTGGgtgaagctttgattat-ttctgttgcatactttgaatattcacttgtgctgatctggaaataaaaaaaaatggtgcag

upper sequence: Vv17s0000g04540.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G74030.1 (Arabidopsis thaliana), 5'ss of exon 3
TGTTGGGGATGAGGGGGGATTTGCTCCCAATGTTCAGGATAATAGGGAGGGGTTGGTTCTGCTTATGGATGCAATTGAAAAGGCTGGTTACACAGGCAAGgtaggcgggttgttgcttttctt--ttcttttgcagtttgattttccttgcagcctttaaggactccaaataaatgatg-cag-----------------------------------------------
||| || ||||| || || ||||| || |||||||| ||||| || |||||  | |||||||| || ||||||||||||||||| |||||||| || ||||||  |  ||| |   | || ||  | ||  | |    | |  || | ||    || |     | | ||| || |  || |||                                               
TGTCGGAGATGAAGGAGGGTTTGCGCCGAATGTTCAAGATAACAGAGAGGGACTAGTTCTGCTCATAGATGCAATTGAAAAGGCCGGTTACACTGGAAAGgtaatcaagttctctttctttttaatgctaatacttgctaaagttgcatgtcatctgtgttt-ccctaaacaacttctggcagcttcggtgtcaatcttacaccactcacataatatataatttttgcag