Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaagatggattttgcagaaaataataattatagtaattaaaaaaaaaaaaaaaactaaactctgttttgatgcag

Basic information

species Vitis vinifera
transcript Vv17s0000g02680.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os03g49600.3 (Oryza sativa), 5'ss of exon 3
GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaagatggatt---ttgcagaaaat------aata------attatagtaattaaaaaaaa--aaaaaaaactaaact--ctgttttgatgcag----
|||||| |  | || ||||| ||| | |||||||| || ||||| || |||||||||||||||||||| |||||||||   || |   ||  |    ||| || |  |       |||      || ||  |  ||||  | ||      |   | |||    |   |||| || |     
GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgagtctgactcagattgtagcatgttgccctgataccctgcatcattttttttaatgacaatttgttactgccaaatatgcgcctttggtgtacctag

upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os03g49600.2 (Oryza sativa), 5'ss of exon 3
GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaagatggatt---ttgcagaaaat------aata------attatagtaattaaaaaaaaa--aaaaaaactaaact--ctgttttgatgcag----
    || |  | || ||||| ||| | |||||||| || ||||| || |||||||||||||||||||| |||||||||   || |   ||  |    ||| || |  |       |||      || ||  |  ||||  | ||      |   | |||    |   |||| || |     
----ATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacattgagtctgactcagattgtagcatgttgccctgataccctgcatcattttttttaatgacaatttgttactgccaaatatgcgcctttggtgtacctag

upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AC217401.3_FGT001 (Zea mays), 5'ss of exon 3
GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaagatggatt---ttgcagaaaataataattatagtaattaaaaaaaaaaaaaaaactaaactct--gttttgatgcag---------------------------
|||||| | ||||| ||||| ||| | |||||||| || ||||| || |||||||||||||||||||| ||||||||| |  | ||  ||  ||   ||| | | |||| | |  || | | |  |  |  | ||      | |  | |  ||     ||| |                           
GAAGATGTCGACCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgt-acataaacctgagttaagttgtacacaatacttaacatggcagtctaggagcacaagttcttttaggtttaagtaccagtgcggtgacacatgcaactttggtttctgtag

upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AC217401.3_FGT002 (Zea mays), 5'ss of exon 3
GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaagatggattttgcagaaaataataattatagtaattaaaaaaaaaaaaaaaactaaactctgttttgatgcag-----------------------
|||||| | || || ||||| || || |||||||| |||||||| || |||||||| ||||||||||| ||||||||||   | ||    || | | |  | |  |   ||  ||    || |     |  |   | | |    ||  || ||| ||                        
GAAGATGTTGATCTCATGAAAAGCCTAAATTTTGATGCATACCGGTTTTCAATCTCCTGGTCCAGGATCTTCCCAGgtg-cataaaatctgactctactaacaccatatatactaactgttgagttgtatgagtca-ccagttgcttattggatccatcgattgtgtcttggtctatctag

upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G118003_T02 (Zea mays), 5'ss of exon 3
GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaagatggattt----tgcagaaaataataattatag----taattaaaaaaaaaaaaaaaactaaactctgttttgatgcag--
|||||  | || || ||||| ||| | || ||||| || ||||| ||||||||||||||||||||||| ||||| ||| |    ||  | || ||     |  |   | |  ||  ||      |  ||         |  |   || |    | ||  | ||     
GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataaatttgacttaagtcgtcgcgcacaccaaacatgagtttttttttgggtgtttactaccgctgatacatcttcggttgtgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351038587|gb|FQ464453.1|FQ464453
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351042229|gb|FQ442696.1|FQ442696
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351055479|gb|FQ442275.1|FQ442275
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351015813|gb|FQ431768.1|FQ431768
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|349820199|gb|FQ406875.1|FQ406875
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|349828779|gb|FQ419112.1|FQ419112
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351033074|gb|FQ446427.1|FQ446427
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|352794098|gb|FQ479340.1|FQ479340
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351026942|gb|FQ436595.1|FQ436595
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCCTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351045661|gb|FQ440846.1|FQ440846
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351041781|gb|FQ455991.1|FQ455991
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCCTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351022837|gb|FQ428746.1|FQ428746
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCCTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|352790099|gb|FQ479709.1|FQ479709
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|349833003|gb|FQ416381.1|FQ416381
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|349824288|gb|FQ417699.1|FQ417699
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|110691322|gb|EE069288.1|EE069288
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351023766|gb|FQ448317.1|FQ448317
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351042412|gb|FQ442879.1|FQ442879
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|349828121|gb|FQ415449.1|FQ415449
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|349821869|gb|FQ413040.1|FQ413040
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|110690437|gb|EE067536.1|EE067536
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|349807852|gb|FQ402243.1|FQ402243
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351038429|gb|FQ464295.1|FQ464295
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|349830823|gb|FQ417121.1|FQ417121
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|349824165|gb|FQ417552.1|FQ417552
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351042983|gb|FQ434424.1|FQ434424
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351049247|gb|FQ428990.1|FQ428990
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCCTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351042839|gb|FQ451133.1|FQ451133
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351021685|gb|FQ437070.1|FQ437070
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351019070|gb|FQ426569.1|FQ426569
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|110686135|gb|EE063475.1|EE063475
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351038347|gb|FQ461039.1|FQ461039
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351042390|gb|FQ442857.1|FQ442857
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351016597|gb|FQ424024.1|FQ424024
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351019040|gb|FQ426539.1|FQ426539
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCCTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|349820204|gb|FQ406880.1|FQ406880
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351016480|gb|FQ423907.1|FQ423907
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCCTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351024209|gb|FQ423632.1|FQ423632
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|349818794|gb|FQ409328.1|FQ409328
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351032953|gb|FQ461842.1|FQ461842
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|110687898|gb|EE065834.1|EE065834
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|110688342|gb|EE066782.1|EE066782
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|349811511|gb|FQ409507.1|FQ409507
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|349829906|gb|FQ422219.1|FQ422219
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCCTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351012024|gb|FQ429830.1|FQ429830
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAGTTGGAAGGGAGTTGCCTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|349828601|gb|FQ418336.1|FQ418336
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351054304|gb|FQ450387.1|FQ450387
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351031036|gb|FQ444863.1|FQ444863
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|110690651|gb|EE067999.1|EE067999
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|351055113|gb|FQ440452.1|FQ440452
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|110694692|gb|EE072021.1|EE072021
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|352798358|gb|FQ480383.1|FQ480383
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|352794496|gb|FQ481729.1|FQ481729
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
EST: gi|349828289|gb|FQ416242.1|FQ416242
EST:     TAATTTTGAAGCTTACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG                         AGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA
genomic: TAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaa ... tttgatgcagAGGGAACTGGGAAAGTGAATTGGAAGGGAGTTGCTTACTACAATAGACTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaagatggattttgcagaaaataataattatagtaattaaaaaaaaaaaaaaaactaaactctgttttgatgcag

- - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - TGAAGC