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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaacttatttttgttagccactctttaagcaggcttagcaatgctttgttgtttatgctataatttcaatatctgcag

Basic information

species Vitis vinifera
transcript Vv17s0000g02550.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110726578|gb|EE102480.1|EE102480
EST:     TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT                         CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: gi|33409261|gb|CF214888.1|CF214888
EST:     TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT                         CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: gi|33409505|gb|CF215132.1|CF215132
EST:     TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT                         CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: gi|30304031|gb|CB980825.1|CB980825
EST:     TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT                         CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: gi|110386787|gb|EC951412.1|EC951412
EST:     TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT                         CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: gi|71872985|gb|DT022040.1|DT022040
EST:     TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT                         CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: gi|351052028|gb|FQ455321.1|FQ455321
EST:     TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT                         CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: gi|110361389|gb|EC924857.1|EC924857
EST:     TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT                         CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: gi|351044429|gb|FQ442960.1|FQ442960
EST:     TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT                         CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCCGTTCAGCGAG
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: gi|352781293|gb|FQ467374.1|FQ467374
EST:     TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT                         CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: gi|352767930|gb|FQ466139.1|FQ466139
EST:     TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT                         CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: gi|352777515|gb|FQ474512.1|FQ474512
EST:     TGGCAGAGTGGATGAACTACGAGGTTTTTAAGCAAAAACTGGAGCACATT                         CAAGGAAAGATCAAACTGTCGGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: gi|352777989|gb|FQ467042.1|FQ467042
EST:     TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT                         CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
EST: gi|30304094|gb|CB980888.1|CB980888
EST:     TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT                         CAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG
genomic: TGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaac ... atatctgcagCAAGGAAAGATCAAACTGTCTGTCGGTGTGCTAAGGACCCAGTTCAGCGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATTgtaagttaacttatttttgttagccactctttaagcaggcttagcaatgctttgttgtttatgctataatttcaatatctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA