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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTATTTATGAAGCTTGCCGCCGTATGGCTGCTCGTAGAGTTGATGCCTTATTGTTAACTGATTCAAATGCGTTACTTTGTGGAATCCTTACAGACAAGgtttgacttgaattactagtgagatatactgccaagccaaaaaaacttgcatgctacatttacctggatttttatggctttacttgtttcacaaaaccattcccttttgtggctgaag

Basic information

species Vitis vinifera
transcript Vv17s0000g01200.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G37370.3 (Glycine max), 5'ss of exon 3
AAGTATTTATGAAGCTTGCCGCCGTATGGCTGCTCGTAGAGTTGATGCCTTATTGTTAACTGATTCAAATGCGTTACTTTGTGGAATCCTTACAGACAAGgtttgacttg-aattactagtgagatatactgccaagccaaaaaaacttgcatgctacatttacctggatttttatggcttta-cttgtttcacaaaaccattcccttttgtggctgaag----
|| | | |||||||||||||| || |||||||| ||||||||||||||  ||||| |||||||||| ||||| || || ||||||||||| ||||||||||| || |    | ||  |  |   |  |  |  |||| || ||||    |     |   ||| | | ||||| |  || |||| |||   |  |       |||  |||||||| | ||     
AACTGTCTATGAAGCTTGCCGTCGGATGGCTGCCCGTAGAGTTGATGCTCTATTGCTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGgtatgcccaatacttgtttttctcaccttttaacaagacagaaaagaaagttgagtc--tttgcgtagatttctgcggttttaacttacatagctttcatgttctattttgtggttaaatacag

upper sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G38140.1 (Glycine max), 5'ss of exon 2
AAGTATTTATGAAGCTTGCCGCCGTATGGCTGCTCGTAGAGTTGATGCCTTATTGTTAACTGATTCAAATGCGTTACTTTGTGGAATCCTTACAGACAAGgtttgacttgaattactagtgagatatactgccaagccaaaaaaacttgcatgctacatttacctggatttttatggctttacttgtttcacaaaaccattcccttttgtggctgaag
||   | ||||||||||||||  | ||||||||||| | |||||||||  ||||  |||||||||| ||||| || || ||||||||||| |||||||||||   | ||     |||  |  ||   | |    | | | ||| | ||   || || | |   ||| | ||||  |  ||||| |  || |        |    |||||||| | |  
AACCGTCTATGAAGCTTGCCGTAGGATGGCTGCTCGCAAAGTTGATGCTCTATTACTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGgt--aagttattggactt-tatgacccattaattaacaagaaagatttttttg-taaactattctgcagtttttag--tttacatacttaatttgctattctaattttgtggttaag-

upper sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G01470.1 (Glycine max), 5'ss of exon 1
AAGTATTTATGAAGCTTGCCGCCGTATGGCTGCTCGTAGAGTTGATGCCTTATTGTTAACTGATTCAAATGCGTTACTTTGTGGAATCCTTACAGACAAGgtttgacttgaattac---tagtgagatatactgccaagccaaaaaaac------ttgcat-gctacatttacctggatttttatggcttt-acttg---tttcacaaa------accattccc-ttttgtggctgaag
||   | ||||||||||||||  | ||||||||||| | ||| |||||  | ||  | |||||||| ||||| || || ||||||||||| |||||||||||  |  ||| | | |   |  |||   || | |   |  ||| ||||       | | || |  || |||   || |||| |   | ||| ||||    || || | |       | ||||   |||||||| | |||
AACCGTCTATGAAGCTTGCCGTAGAATGGCTGCTCGCAAAGTAGATGCTCTGTTACTCACTGATTCCAATGCTTTGCTCTGTGGAATCCTCACAGACAAGgtaagtattggacttctttttatgactcatgcagaagaaacaagaaaatagactatagtattgggacttttgtttgaatttgtgcagtttttacttaaatttacatacataacttgctattctaattttgtggttaaag

upper sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G17720.1 (Glycine max), 5'ss of exon 1
AAGTATTTATGAAGCTTGCCGCCGTATGGCTGCTCGTAGAGTTGATGCCTTATTGTTAACTGATTCAAATGCGTTACTTTGTGGAATCCTTACAGACAAGgtttgacttgaattactagtgagatatactgccaagccaaaaaaacttgcatgctacatttacctggatttttatggcttta-cttgtttcacaaaaccattcccttttgtggctgaag----
|| | | |||||||||||||  || |||| ||| |||||||  |||||  ||||  |||||||||| ||||| || || ||||||||||| ||| ||||||| || |    | |  |  |   |     |   |||  ||| |||      |       || ||||||||| | ||| |||| |||   |  |       |||  |||||||  | ||     
AACTGTCTATGAAGCTTGCCATCGGATGGTTGCCCGTAGAGGGGATGCTCTATTACTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACACACAAGgtatgtccgatacttgttttctcaccctttaataag--aaagaaaagaaagttgagtcgttgcctggatttctgtggttttaacttacatagctttcatgttctattttgtgattaaatacag

upper sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G50530.1 (Arabidopsis thaliana), 5'ss of exon 3
AAGTATTTATGAAGCTTGCCGCCGTATGGCTGCTCGTAGAGTTGATGCCTTATTGTTAACTGATTCAAATGCGTTACTTTGTGGAATCCTTACAGACAAGgtttgacttgaattactagtgagatatactgccaagccaaaaaaacttgcatgctacatttacctggatttttatggctttacttgtttcacaaaaccattcccttttgtggctgaag
|| | | | ||||||||| ||  | |||||||||||| | |||||||| |||||| | |||||||| ||||| ||||||||||| ||||| ||||| | ||| | || ||   |  |  |||     | |   ||  ||||      || |   | || |||  |   ||||| |  || |  |  |||    ||                       
AACTTTATTTGAAGCTTGTCGAAGAATGGCTGCTCGTCGTGTTGATGCGTTATTGCTGACTGATTCTAATGCATTACTTTGTGGGATCCTAACAGATAGGgtat-acatg---ttttcatgaacaggattctaaatgcaaa-----ctggacttttcacttatgtttttttttttatctcttttgttttttttaag----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26264368|gb|CA815431.1|CA815431
EST:     TATTGTTAACTGATTCAAATGCGTTACTTTGTGGAATCCTTACAGACAAG                         GACATAGCAACAAGAGTCATTGCT-GTGAACTTAATCTTGAGGAAACACCA
genomic: TATTGTTAACTGATTCAAATGCGTTACTTTGTGGAATCCTTACAGACAAGgtttgacttg ... gtggctgaagGACATAGCAACAAGAGTCATTGCTCGTGAACTTAATCTTGAGGAAACACCA