Sequence
atgc intronic sequence ATGC exonic sequenceGTAAGAAGAGAGAAAATCAGTGAGAGGATGAAGCTCTTGCAAGCACTTGTTCCTGGTTGTGACAAGgtgaagttgattctcttctaaatgataatgacttgtttttcctagacaagtatttttctgacactgtcatgtggtttggcttgaaatatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g00430.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os08g42470.1 (Oryza sativa), 5'ss of exon 3
GTAAGAAGAGAGAAAATCAGTGAGAGGATGAAGCTCTTGCAAGCACTTGTTCCTGGTTGTGACAAGgtgaag--ttgattctcttctaaatgataatgacttgtttttcctagacaagtatttttctgacactgtcat--------gtggtttggcttgaaatatag-------------------------------------------------------------------
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GTGAGGAGGGAGAGGATCAGTGAGAGGATGAGGATGCTGCAAGCACTGGTCCCTGGTTGTGACAAGgtaaaaaataagttggttactatttaactattacatgct----ctagttcaattctttcctctcatttttatttttgagagtaattattgttgagttgtacagttgtagtgacatcttgctaatgcatggctctaactttgataagaaacaactgtgcttttcttcag
upper sequence: Vv17s0000g00430.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM5G882527_T03 (Zea mays), 5'ss of exon 3
GTAAGAAGAGAGAAAATCAGTGAGAGGATGAAGCTCTTGCAAGCACTTGTTCCTGGTTGTGACAAGgtgaagttgatt-ctcttctaaatgataat-gacttgttttt-cctagacaagtatttttctgacactgtcatgtggtttggcttgaaatatag-----------------------
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GTGAGGAGAGAGAGGATCAGTGAGAGGATGAGGATGCTGCAAGCACTGGTCCCTGGTTGTGACAAGgtcagattagttacttggattaactatatttgatatactgatatctgcttataagttatagtaggccgtttaagtagtaaactttgagaaggaacaaatgtgcttttttttggacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110369449|gb|EC933609.1|EC933609EST: TCAGTGAGAGGATGAAGCTCTTGCAAGCACTTGTTCCTGGTTGTGACAAG GTTACTGGAAAGGCCCTTATGTTGGATGAAATAATCAACTATGTCCAGTCC
genomic: TCAGTGAGAGGATGAAGCTCTTGCAAGCACTTGTTCCTGGTTGTGACAAGgtgaagttga ... tgaaatatagGTTACTGGAAAGGCCCTTATGTTGGATGAAATAATCAACTATGTCCAGTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTAAGAAGAGAGAAAATCAGTGAGAGGATGAAGCTCTTGCAAGCACTTGTTCCTGGTTGTGACAAGgtgaagttgattctcttctaaatgataatgacttgtttttcctagacaagtatttttctgacactgtcatgtggtttggcttgaaatatag
- - - - - - - - - - GAGAGG
- - - - - - - - - - - AGAGGA
- - - - - - - - - - - GAGGAT
- - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - TGAAGC