1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCAACGCACCCAGCTAGGGTTTTTGCGTAGAAAGCAGAGAGAGACGGCACCTTCATCAATCGACGATGGCGGACGAAGAGTACAACGACGTGGATATGGGgttcgtccctccttttactcgcattttcagaattttagattttatcttttgtccttcaatcctgtttgtggcttggtaattttctgttggttgtcgagaa...
species | Vitis vinifera |
transcript | Vv16s0100g00530.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTCATCAATCGACGATGGCGGACGAAGAGTACAACGACGTGGATATGGG ATATGAGGATGAGCCGCCAGAGCCTGAGATTGAAEST: gi|110686792|gb|EE064832.1|EE064832
genomic: CTTCATCAATCGACGATGGCGGACGAAGAGTACAACGACGTGGATATGGGgttcgtccct ... gttgatgcagATATGAGGATGAGCCGCCAGAGCCTGAGATTGAA
EST: CTTCATCAATCGACGATGGCGGACGAAGAGTACAACGACGTGGATATGGG ATATGAGGATGAGCCGCCAGAGCCTGAGATTGAAEST: gi|26265984|gb|CA817047.1|CA817047
genomic: CTTCATCAATCGACGATGGCGGACGAAGAGTACAACGACGTGGATATGGGgttcgtccct ... gttgatgcagATATGAGGATGAGCCGCCAGAGCCTGAGATTGAA
EST: GACGATGGCGGACGAAGAGTACAACGACGTGGATATGGG ATATGAGGATGAGCCGCCAGAGCCTGAGATTGAAEST: gi|110413522|gb|EC979311.1|EC979311
genomic: GACGATGGCGGACGAAGAGTACAACGACGTGGATATGGGgttcgtccct ... gttgatgcagATATGAGGATGAGCCGCCAGAGCCTGAGATTGAA
EST: CTTCATCAATCGACGATGGCGGACGAAGAGTACAACGACGTGGATATGGG ATATGAGGATGAGCCGCCAGAGCCTGAGATTGAAEST: gi|110386849|gb|EC951479.1|EC951479
genomic: CTTCATCAATCGACGATGGCGGACGAAGAGTACAACGACGTGGATATGGGgttcgtccct ... gttgatgcagATATGAGGATGAGCCGCCAGAGCCTGAGATTGAA
EST: CTTCATCAATCGACGATGGCGGACGAAGAGTACAACGACGTGGATATGGG ATATGAGGATGAGCCGCCAGAGCCTGAGATTGAAEST: gi|110365638|gb|EC928962.1|EC928962
genomic: CTTCATCAATCGACGATGGCGGACGAAGAGTACAACGACGTGGATATGGGgttcgtccct ... gttgatgcagATATGAGGATGAGCCGCCAGAGCCTGAGATTGAA
EST: CTTCATCAATCGACGATGGCGGACGAAGAGTACAACGACGTGGATATGGG ATATGAGGATGAGCCGCCAGAGCCTGAGATTGAAEST: gi|51050339|gb|CO818499.1|CO818499
genomic: CTTCATCAATCGACGATGGCGGACGAAGAGTACAACGACGTGGATATGGGgttcgtccct ... gttgatgcagATATGAGGATGAGCCGCCAGAGCCTGAGATTGAA
EST: ATCAATCGACGATGGCGGACGAAGAGTACAACGACGTGGATATGGG ATATGAGGATGAGCCGCCAGAGCCTGAGATTGAAEST: gi|26263262|gb|CA814325.1|CA814325
genomic: ATCAATCGACGATGGCGGACGAAGAGTACAACGACGTGGATATGGGgttcgtccct ... gttgatgcagATATGAGGATGAGCCGCCAGAGCCTGAGATTGAA
EST: CTTCATCAATCGACGATGGCGGACGAAGAGTACAACGACGTGGATATGGG ATATGAGGATGAGCCGCCAGAGCCTGAGATTGAAEST: gi|26262322|gb|CA813385.1|CA813385
genomic: CTTCATCAATCGACGATGGCGGACGAAGAGTACAACGACGTGGATATGGGgttcgtccct ... gttgatgcagATATGAGGATGAGCCGCCAGAGCCTGAGATTGAA
EST: CTTCATCAATCGACGATGGCGGACGAAGAGTACAACGACGTGGATATGGG ATATGAGGATGAGCCGCCAGAGCCTGAGATTGAAEST: gi|26263998|gb|CA815061.1|CA815061
genomic: CTTCATCAATCGACGATGGCGGACGAAGAGTACAACGACGTGGATATGGGgttcgtccct ... gttgatgcagATATGAGGATGAGCCGCCAGAGCCTGAGATTGAA
EST: TGGCGGACGAAGAGTACAACGACGTGGATATGGG ATATGAGGATGAGCCGCCAGAGCCTGAGATTGAA
genomic: TGGCGGACGAAGAGTACAACGACGTGGATATGGGgttcgtccct ... gttgatgcagATATGAGGATGAGCCGCCAGAGCCTGAGATTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAACGCACCCAGCTAGGGTTTTTGCGTAGAAAGCAGAGAGAGACGGCACCTTCATCAATCGACGATGGCGGACGAAGAGTACAACGACGTGGATATGGGgttcgtccctccttttactcgcattttcagaattttagattttatcttttgtccttcaatcctgtttgtggcttggtaattttctgttggttgtcgagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctcct