1 5' 3' | 2 5' 3' | 3 5' 3' |
AAAAGTGATGTTGAATCTCACCGAGTTGTTGATGAATCAGTTGATTAATTTGGACAGTATAATCGCGGATGGAGACGTTAAATTGCAGAGGAAAATGCAGgtaaatttaatctaaatggaagagaaattcagcggtctaattttagatttcttgatgatcaaaacttgtcttgttgaag
species | Vitis vinifera |
transcript | Vv16s0100g00470.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGACAGTATAATCGCGGATGGAGACGCTAAATTGCAGAGGAAAATGCAG GTGAGAAGAGTGCAGAAGTATGTCGAAACTCTAGATATGTTGAAGATAAAGEST: gi|352781645|gb|FQ468943.1|FQ468943
genomic: TGGACAGTATAATCGCGGATGGAGACGTTAAATTGCAGAGGAAAATGCAGgtaaatttaa ... cttgttgaagGTGAGAAGAGTGCAGAAGTATGTCGAAACTCTAGATATGTTGAAGATAAAG
EST: TGGACAGTATAATCGCGGATGGAGACGTTAAATTGCAGAGGAAAATGCAG GTGAGAAGAGTGCAGAAGTATGTCGAAACTCTAGATATGTTGAAGATAAAGEST: gi|161721184|gb|FC071041.1|FC071041
genomic: TGGACAGTATAATCGCGGATGGAGACGTTAAATTGCAGAGGAAAATGCAGgtaaatttaa ... cttgttgaagGTGAGAAGAGTGCAGAAGTATGTCGAAACTCTAGATATGTTGAAGATAAAG
EST: TGGACAGTATAATCGCGGATGGAGACGTTAAATTGCAGAGGAAAATGCAG GTGAGAAGAGTGCAGAAGTATGTCGAAACTCTAGATATGTTGAAGATAAAG
genomic: TGGACAGTATAATCGCGGATGGAGACGTTAAATTGCAGAGGAAAATGCAGgtaaatttaa ... cttgttgaagGTGAGAAGAGTGCAGAAGTATGTCGAAACTCTAGATATGTTGAAGATAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAGTGATGTTGAATCTCACCGAGTTGTTGATGAATCAGTTGATTAATTTGGACAGTATAATCGCGGATGGAGACGTTAAATTGCAGAGGAAAATGCAGgtaaatttaatctaaatggaagagaaattcagcggtctaattttagatttcttgatgatcaaaacttgtcttgttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA