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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCTGTTTCAAGCAAGGAGCATGGAGAAGAGAACATGGCAGCTTGGCTTCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGGgtattattccttttcctccctttatgttttctttctttcaagtatcatttcctaatttcccttttactttgtgttgttttag

Basic information

species Vitis vinifera
transcript Vv16s0100g00290.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71884490|gb|DT033545.1|DT033545
EST:     TCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGG                         GCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
genomic: TCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGGgtattattcc ... gttgttttagGCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
EST: gi|37188548|gb|CF607897.1|CF607897
EST:     TCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGG                         GCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
genomic: TCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGGgtattattcc ... gttgttttagGCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
EST: gi|110702722|gb|EE078942.1|EE078942
EST:     TCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGG                         GCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
genomic: TCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGGgtattattcc ... gttgttttagGCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
EST: gi|71890669|gb|DT039724.1|DT039724
EST:     TCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGG                         GCCCTTATGATGTCAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
genomic: TCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGGgtattattcc ... gttgttttagGCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
EST: gi|110711540|gb|EE088133.1|EE088133
EST:     TCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGG                         GCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
genomic: TCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGGgtattattcc ... gttgttttagGCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
EST: gi|110712208|gb|EE089569.1|EE089569
EST:     TCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGG                         GCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
genomic: TCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGGgtattattcc ... gttgttttagGCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
EST: gi|26257801|gb|CA808864.1|CA808864
EST:     TCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGG                         GCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
genomic: TCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGGgtattattcc ... gttgttttagGCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
EST: gi|110712986|gb|EE088512.1|EE088512
EST:     TCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGG                         GCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
genomic: TCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGGgtattattcc ... gttgttttagGCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
EST: gi|37189545|gb|CF608894.1|CF608894
EST:     TCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGG                         GCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
genomic: TCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGGgtattattcc ... gttgttttagGCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
EST: gi|46917777|gb|CN547106.1|CN547106
EST:     TCAAGATTCAACCCTACATTCTCCCTTCTCTGG                         GCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
genomic: TCAAGATTCAACCCTACATTCTCCCTTCTCTGGgtattattcc ... gttgttttagGCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
EST: gi|110713392|gb|EE089275.1|EE089275
EST:     TCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGG                         GCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
genomic: TCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGGgtattattcc ... gttgttttagGCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
EST: gi|71884639|gb|DT033694.1|DT033694
EST:     TCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGG                         GCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG
genomic: TCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGGgtattattcc ... gttgttttagGCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTG