Sequence
atgc intronic sequence ATGC exonic sequenceTTCACAATTCAAAGAGGCGTTGGGACAGCAGATTGTGTTAGTGTTAACTATGATGATTTTGTCAATGATGTAGAAATGGGCGACATGCTTCTCGTGGATGgtatgaaaccatgttttttctgtcatacaaataggttttgtagtaacctctttcctttactttccatcagtttgttcacccacttatcctcaattaactt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g47080.1 (Oryza sativa), 5'ss of exon 3
TTCACAATTCAAAGAGGCGTTGGGACAGCAGATTGTGTTAGTGTTAACTATGATGATTTTGTCAATGATGTAGAAATGGGCGACATGCTTCTCGTGGATGgtatgaaaccatgttttttctgtcatacaaataggttttgtagtaacctctttcctttactttccatcagtttgttcacccacttatcct--caattaactt
||||||||| | ||||| |||||||| | |||||||| |||||||||||||| ||||| |||||||||||| |||| |||||||| ||||| ||||||||| || || ||| || | || | | | |||| | | ||| | |||| | | | | | ||| | |||
TTCACAATTAAGAGAGGAGTTGGGACTGAGACATGTGTTAGCGTTAACTATGATGACTTTGTTAATGATGTAGAAGTGGGTGACATGCTCCTCGTAGATGgtatgtgg--atattccttcccctctaatctttaacttacttttgtctcctttgcatagacacacatatgattgtattcactgtaagcaaaacaactcactc
upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G152686_T01 (Zea mays), 5'ss of exon 3
TTCACAATTCAAAGAGGCGTTGGGACAGCAGATTGTGTTAGTGTTAACTATGATGATTTTGTCAATGATGTAGAAATGGGCGACATGCTTCTCGTGGATGgta---tgaaac---catgttttttctgtcatacaaataggttttgtagtaacctctttcctttactttccatcagtttgttcacccacttatcctcaattaactt
|| ||||| |||| || |||||||| | |||||||| ||||||||||| || ||||| |||||||| ||| ||||||||||||| || || ||||||| ||| | ||| |||||||| | | || || | || ||| || | || | || | | | | | ||| || |||
TTTACAATCAAAAGGGGAGTTGGGACTGATACGTGTGTTAGCGTTAACTATGACGACTTTGTTAATGATGTTGAAGTGGGCGACATGCTCCTTGTAGATGgtatgctgatatttacattccttttctgttagaaaataagactacataaccccctgaactattaatatt---tgggtctactttaacccagaacctacat-aac--
upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G28980.1 (Glycine max), 5'ss of exon 3
TTCACAATTCAAAGAGGCGTTGGGACAGCAGATTGTGTTAGTGTTAACTATGATGATTTTGTCAATGATGTAGAAATGGGCGACATGCTTCTCGTGGATGgtatgaaaccatgttttttctgtcatacaaataggttttgtagtaacctctttcctttactt--tccatcagtttgttcacccacttatcctcaattaactt
|| || ||||| ||||| ||||| || || |||||||||||||| ||||| ||||||||||| |||||||| |||||||| ||||||||||| || ||||||||| | | | | | | || | || | | | || | || | | | || || |||| |
TTTACTATTCAGAGAGGTGTTGGAACTGCTGATTGTGTTAGTGTGAACTACGATGATTTTGTGAATGATGTGGAAATGGGGGACATGCTTCTTGTCGATGgtatggttatcaactgatcaactaaaatgttcgaactccataaactttttgttatgctgatggattgataaattagcacttcaacataagtgtaatttat--
upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G23150.1 (Glycine max), 5'ss of exon 3
TTCACAATTCAAAGAGGCGTTGGGACAGCAGATTGTGTTAGTGTTAACTATGATGATTTTGTCAATGATGTAGAAATGGGCGACATGCTTCTCGTGGATGgtatgaaaccatgttttttctgtcatacaaataggttttgtagtaacctctttcctttactt-----tccatcagtttgttcacccacttatcctcaattaactt
|| || ||||| ||||| ||||| || || |||||||||||||| ||||| |||||||||||||||||||| ||| |||| ||||||||||| || ||||||||| | || | | | | || ||| | ||| | | || | || | || | || || || || |||| |
TTTACTATTCAGAGAGGTGTTGGAACTGCTGATTGTGTTAGTGTGAACTACGATGATTTTGTCAATGATGTGGAAGTGGGGGACATGCTTCTTGTCGATGgtatggttat-caactgatcaactaaatgttcaaactccata--aacttttttgttatgctaatggattgataaattagctctccaacataagtgtaatttat--
upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G30430.1 (Glycine max), 5'ss of exon 3
TTCACAATTCAAAGAGGCGTTGGGACAGCAGATTGTGTTAGTGTTAACTATGATGATTTTGTCAATGATGTAGAAATGGGCGACATGCTTCTCGTGGATGgtatga-aacca--tgttttttc----tgtcatacaaataggttttgtagtaacctctttcctttactttccatcagtttgttcacccacttatcctcaattaactt
|| || || | || || ||||| || ||||||||||||||||| |||||||| ||||| ||||||||||| || |||| ||||||||||| || ||||||||| ||||| || || | ||| | | ||| | | || ||| | || | ||| || || | |||| ||
TTTACCATCCGGAGGGGTGTTGGAACTGCAGATTGTGTTAGTGTGAACTATGACGATTTCGTCAATGATGTGGATGTGGGAGACATGCTTCTTGTTGATGgtatggcaaccaactgattggtaaaaatgtttgaaatataaacaatttgttatgctcgtgggttgataagccaccaaacatgggactaatttattctttt-------
upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G37210.1 (Glycine max), 5'ss of exon 3
TTCACAATTCAAAGAGGCGTTGGGACAGCAGATTGTGTTAGTGTTAACTATGATGATTTTGTCAATGATGTAGAAATGGGCGACATGCTTCTCGTGGATGgtatgaaaccatgttttttctgtcatacaaataggttttgtagtaacctctttcctttactttccatcagtttgttcacccacttatcctcaattaactt
|| || || | || || ||||| || ||||||||||||||||| |||||||| ||||| ||||||||||| || |||| ||||||||||| || ||||||||| | | | || | | | | | | ||| || | || || | | | |||| ||
TTTACCATCCGGAGGGGTGTTGGAACTGCAGATTGTGTTAGTGTGAACTATGACGATTTCGTCAATGATGTGGATGTGGGGGACATGCTTCTTGTTGATGgtatggcaaccaactaattggtaaaagtgtttgaaatataaaaaatgtgttttgctcgtggattgataagccaccaagcatgggactaatttattatttt
upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G52920.1 (Arabidopsis thaliana), 5'ss of exon 3
TTCACAATTCAAAGAGGCGTTGGGACAGCAGATTGTGTTAGTGTTAACTATGATGATTTTGTCAATGATGTAGAAATGGGCGACATGCTTCTCGTGGATGgtatgaaaccatgtt-ttttctgtcatacaaataggttttgtagtaacctctttcctttactttccatcagtttgttcacccacttatcctcaattaactt
|| |||||| | ||||| || | ||| || |||||| |||||||||||||||||||| || ||||| || ||| ||| ||||||||||| || ||||||||| | ||| || || | || ||||| |||||| | | | || ||| ||| | ||| | | | ||| | ||
TTTACAATTGAGAGAGGAGTCAGCACACCAAGTTGTGTCAGTGTTAACTATGATGATTTCGTTAATGACGTGGAAGCGGGTGACATGCTTCTTGTTGATGgtatgta--catcttattatttggtgtacaag--ggttttacatctgctttagtctttt-----ccaatatattgatggcgcttttactatgttgtag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110688927|gb|EE068039.1|EE068039EST: TGATGATTTTGTCAATGATGTAGAAATGGGCGACATGCTTCTCGTGGATG GTGGTATGATGTCATTAATGGTCAAGTCCAAGACTGGAGATTCAGTGAAAT
genomic: TGATGATTTTGTCAATGATGTAGAAATGGGCGACATGCTTCTCGTGGATGgtatgaaacc ... tatgctatagGTGGTATGATGTCATTAATGGTCAAGTCCAAGACTGGAGATTCAGTGAAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCACAATTCAAAGAGGCGTTGGGACAGCAGATTGTGTTAGTGTTAACTATGATGATTTTGTCAATGATGTAGAAATGGGCGACATGCTTCTCGTGGATGgtatgaaaccatgttttttctgtcatacaaataggttttgtagtaacctctttcctttactttccatcagtttgttcacccacttatcctcaattaactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacccac