Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCTGATGCATTTTTTGGAATGAAACCTTGGACAGTGCCTTGGACAGCAATGACCATTTTGCAGgtaaagcagcttctgtatagcacatggttactatgagatattgtggaattgtcaagtatatattaagttcatgccatctatcttattttcataacttaaa...

Basic information

species Vitis vinifera
transcript Vv16s0050g01870.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g01870.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G30380.1 (Glycine max), 5'ss of exon 4
GCTGCTGATGCATTTTTTGGAATGAAACCTTGGACAGTGCCTTGGACAGCAATGACCATTTTGCAGgtaaagcagcttctgtatagcacatggttactatgagatattgtggaattgtcaagtatatattaagttcatgccatctatcttattttcataacttaaa
| || || ||| || |||| |||||||| ||||||||||||| ||||||| | ||||||||| | |||| | | |||| | | | | || | | | | | || || || | | || | | | || ||||
GTCATAACTGTCATTCGTGGTGTGGAACCCTGGACAGTTCCTTGGACAGCAAAGACCATTGTTCAGgtaaagtatattctttcttaaacattaccaatgttatcaatgcttagagtatgttttgtactctagattaaggattcaagtcgtgcctccttaccttagg