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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGTGCTGCATATGTTCATCTAAAACACTCTGACTTTTCTAAGCACACTCGAAACCTTGCACCTGCAAGCAGGGCTATTTTGCTCTCAGGACCTGCTGgtatgctctctggaatatgttctctgaccctgcatttggatatttatgtttctgagtccttttgatggcctaacttgtttgccttttgctttacttttatttttgttaatcttttgaag

Basic information

species Vitis vinifera
transcript Vv16s0050g01850.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g01850.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G29040.1 (Glycine max), 5'ss of exon 2
ACAAGTGCTGCATATGTTCATCTAAAACACTCTGACTTTTCTAAGCACACTCGAAACCTTGCACCTGCAAGCAGGGCTATTTTGCTCTCAGGACCTGCTGgtatgctctctggaatatgttctctgaccctgcatttggatatttatgtttctgagtccttttgatggcctaacttgtttgccttttgctttacttttatttttgttaatcttttgaag
||||||||||||||||||||| |||||||   | ||||||| ||||||||  | |||||  |||| |||||||||||||||||||| || || || || ||||| ||       | || |   ||   |||||       | || |  |||     |  ||||  |      | ||  ||   | ||                                
ACAAGTGCTGCATATGTTCATTTAAAACATCTTCACTTTTCCAAGCACACCAGGAACCTCCCACCAGCAAGCAGGGCTATTTTGCTATCTGGTCCAGCAGgtatactaagcaaga-atttaaccttgtcctgccgaaaccttttcaaattttaagttggttttactaatactatttacttatatattttgaag--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71861211|gb|DT010266.1|DT010266
EST:     TCGAAACCTTGCACCTGCAAGCAGGGCTATTTTGCTCTCAGGACCTGCTG                         AACTTTACCAGCAAACACTTGCCAAAGCTTTAGCACATTTCTTTGAAGCAA
genomic: TCGAAACCTTGCACCTGCAAGCAGGGCTATTTTGCTCTCAGGACCTGCTGgtatgctctc ... tcttttgaagAACTTTACCAGCAAACACTTGCCAAAGCTTTAGCACATTTCTTTGAAGCAA