1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGCATTCTTGGATTAGAATCTGGAGCTTCAGATTCAGAAATAAAGAAGGCATACAGGAGACTCTCGATTCAATACCATCCTGATAAAAATCCGGATCCAGgttgaggttctagttcttcagttaatatgtgttccttagttttactttgatttagcaagtactgcgtcttcttttgaatcatctgtgtttactatcaatttctttttgcatttatttatttatctttttttttttgttttccag
species | Vitis vinifera |
transcript | Vv16s0050g01460.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATACAGGAGACTCTCGATTCAATACCATCCTGATAAAAATCCGGATCCAG AGGCCCACAAATATTTTGTGGAGTTCATATCTAAGGCTTATCAGGCTCTCAEST: gi|351040685|gb|FQ438229.1|FQ438229
genomic: ATACAGGAGACTCTCGATTCAATACCATCCTGATAAAAATCCGGATCCAGgttgaggttc ... tgttttccagAGGCCCACAAATATTTTGTGGAGTTCATATCTAAGGCTTATCAGGCTCTCA
EST: ATACAGGAGACTCTCGATTCAATACCATCCTGATAAAAATCCGGATCCAG AGGCCCACAAATATTTTGTGGAGTTCATATCTAAGGCTTATCAGGCTCTCAEST: gi|351023901|gb|FQ423324.1|FQ423324
genomic: ATACAGGAGACTCTCGATTCAATACCATCCTGATAAAAATCCGGATCCAGgttgaggttc ... tgttttccagAGGCCCACAAATATTTTGTGGAGTTCATATCTAAGGCTTATCAGGCTCTCA
EST: ATACGGGAGACTCTCGATTCAATACCATCCTGATAAAAATCCGGATCCAG AGGCCCACAAATATTTTGTGGAGTTCATATCTAAGGCTTATCAGGCTCTCA
genomic: ATACAGGAGACTCTCGATTCAATACCATCCTGATAAAAATCCGGATCCAGgttgaggttc ... tgttttccagAGGCCCACAAATATTTTGTGGAGTTCATATCTAAGGCTTATCAGGCTCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCATTCTTGGATTAGAATCTGGAGCTTCAGATTCAGAAATAAAGAAGGCATACAGGAGACTCTCGATTCAATACCATCCTGATAAAAATCCGGATCCAGgttgaggttctagttcttcagttaatatgtgttccttagttttactttgatttagcaagtactgcgtcttcttttgaatcatctgtgtttactatcaatttctttttgcatttatttatttatctttttttttttgttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA