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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTATTGAAGTTTTGCCATCATATGGAGTGGGAAGAGATGGAGGTGGAAGGCATAGTAGCCTTATTTTTGGAACGAACCTCACTGATGTTGTAATTACAGgtaataataacactttgggactgttgtatgcttgaggataagttatatatgcaccattggctaagaacattttgttaatgggacccttcaccag

Basic information

species Vitis vinifera
transcript Vv16s0050g01110.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g01110.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G24470.1 (Glycine max), 5'ss of exon 2
CTTATTGAAGTTTTGCCATCATATGGAGTGGGAAGAGATG---GAGGTGGAAGGCATAGTAGCCTTATTTTTGGAACGAACCTCACTGATGTTGTAATTACAGgtaa----taataacactttgggactgttgtatgcttgaggataagttatatatgcaccattggctaagaacattttgttaatgggacccttcaccag---------
    ||   ||  | |||||||||||    ||||| ||||     | |||||||  |||||| || ||||||||||| |||||||||||||| ||||| || |||||    ||    ||        | | | |  |     | | | || ||  |||   ||||||   | | ||||||  ||||   ||  ||    |          
---CTTCCTGTGCTACCATCATATGGCAGAGGAAGGGATGCTCCTGATGGAAGGTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTAGTAATCACTGgtaactactagcctcatcactaagcagctattagaggttgtaaaggtcatgcatgtctcattgg---aaatcatttt--taatatcacttttatttattcattatag

upper sequence: Vv16s0050g01110.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G29780.1 (Glycine max), 5'ss of exon 3
CTTATTGAAGTTTTGCCATCATATGGAGTGGGAAGAGATG---GAGGTGGAAGGCATAGTAGCCTTATTTTTGGAACGAACCTCACTGATGTTGTAATTACAGgtaataataacactttgggactgttgtatgcttgaggataagttatatatgcaccattggctaagaacattttgttaatgggacccttcaccag-----------
    ||   ||  | |||||||||||    ||||| ||||     | |||||||  |||||| || ||||||||||| ||||||||||||||  |||| || |||||  |  | ||             | |  | |||| |         |||   ||||||     || | ||| ||||||   |  || |               
---CTTCCTGTGCTACCATCATATGGCAGAGGAAGGGATGCTCCTGATGGAAGGTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTAATAATCACTGgtaactactagacccatcactaaacatctattagaggttgttaaggtcatgtctcattgg----aaataattt-ttaatgtctctttttatttttatttcattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77586669|gb|DV222463.1|DV222463
EST:     GCATAGTAGCCTTATTTTTGGAACGAACCTCACTGATGTTGTAATTACAG                         GTGGCAATGGAACCCTCAATGGTCAGGGTAAATACTGGTGGGACAAGTTCC
genomic: GCATAGTAGCCTTATTTTTGGAACGAACCTCACTGATGTTGTAATTACAGgtaataataa ... ccttcaccagGTGGCAATGGAACCCTCAATGGTCAGGGTAAATACTGGTGGGACAAGTTCC
EST: gi|161721296|gb|FC070042.1|FC070042
EST:     GCATAGTAGCCTTATTTTTGGAACGAACCTCACTGATGTTGTAATTACAG                         GTGGCAATGGAACCCTCAATGGTCAGGGTAAATACTGGTGGGACAAGTTCC
genomic: GCATAGTAGCCTTATTTTTGGAACGAACCTCACTGATGTTGTAATTACAGgtaataataa ... ccttcaccagGTGGCAATGGAACCCTCAATGGTCAGGGTAAATACTGGTGGGACAAGTTCC
EST: gi|351014648|gb|FQ437650.1|FQ437650
EST:     GCATAGTAGCCTTATTTTTGGAACGAACCTCACTGATGTTGTAATTACAG                         GTGGCAATGGAACCCTCAATGGTCAGGGTAAATACTGGTGGGACAAGTTCC
genomic: GCATAGTAGCCTTATTTTTGGAACGAACCTCACTGATGTTGTAATTACAGgtaataataa ... ccttcaccagGTGGCAATGGAACCCTCAATGGTCAGGGTAAATACTGGTGGGACAAGTTCC
EST: gi|110698435|gb|EE075933.1|EE075933
EST:     GCATAGTAGCCTTATTTTTGGAACGAACCTCACTGATGTTGTAATTACAG                         GTGGCAATGGAACCCTCAATGGTCAGGGTAAATACTGGTGGGACAAGTTCC
genomic: GCATAGTAGCCTTATTTTTGGAACGAACCTCACTGATGTTGTAATTACAGgtaataataa ... ccttcaccagGTGGCAATGGAACCCTCAATGGTCAGGGTAAATACTGGTGGGACAAGTTCC