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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGGCATGGAGTTCTGGGCGAGATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAGgttttcctcctactcctttcctcattcttcttaaacacctctggtcgctgagaaatcttcctggacattttctcggtaaccaaacagtggattttctgtttgatcattctaaaaccttttggattgcag

Basic information

species Vitis vinifera
transcript Vv16s0050g01090.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g01090.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G37560.2 (Glycine max), 5'ss of exon 3
GTAGGCATGGAGTTCTGGGCGAGATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAGgttttcctcctactcctttcctcattcttcttaaacacctctggtcgctgagaaatcttcctggacattttctcggtaaccaaaca--gtggattttctgtttgatcattc--taaaacct---tttggattgcag--------
|| |  ||||| || ||||| ||||||||||| | |||||| ||||| || ||||| ||||||||||||||||| | | ||| |     ||| ||| | ||      ||  | |  |   || |  ||  |||   | ||| | |||  ||   ||||  | | ||||| | |    ||||||  |||||| |    ||| ||||  |        
GTGGCTATGGAATTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAGgtatgcttccga-----ttcttcaatttt-----gcattttttttttatgtgccatgatccaataaattatttcgacaattcaacaaagagaattttttataatctcattcattaaaacatgagcttgaattgttgctttgcag

upper sequence: Vv16s0050g01090.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G30230.2 (Glycine max), 5'ss of exon 3
GTAGGCATGGAGTTCTGGGCGAGATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAGgttttcctcctactcctttcctcattcttcttaaacacctctggtcgctgagaaatcttcctggacattttctc--ggtaaccaaacagtggattttctgtttgatcattctaaaaccttttggattgcag-----------------------------------------
|| |  |||||  | ||||| ||||||||||| | |||||| ||||| || ||||| ||||||||||||||||| | | ||| | |   || |  ||| || ||       | || |    ||  |||  |  | |||| ||   |  |  ||   || | |  |   |   ||| || |||    | | | ||  ||   |                                          
GTGGCTATGGAACTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAGgtctgcatccaatt---tttcatattttttttgtga---tttgatt--cgatcaattattttagacaattcaccaagaaaattgaataattaagagttatttttattattt---atcttattcaataataataataaaaaaaaaaacatgagcttgagttgttgctttgcag

upper sequence: Vv16s0050g01090.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G24530.1 (Glycine max), 5'ss of exon 3
GTAGGCATGGAGTTCTGGGCGAGATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAGgttttcctcctactcctttcctcattcttcttaaacacctct---ggtcgctgag-aaatcttcctggacattttctcggtaaccaaacagtggattttctgtttgatcattctaaaaccttttggattgcag
|| || |||||||| ||||| |||||||||||||  ||||| ||||| || ||| | ||||||||||| |||||   | | | | |  || | || ||| ||  || |   |||   | || |||   || ||    | |   |||| ||  |        |     | || |                                
GTGGGTATGGAGTTTTGGGCTAGATGGGCTCACAGGGCTCTATGGCATGCTTCCCTGTGGCACATGCATGAGgtaagctttcaattggtt-catctttcctcggaatcctgtctctcgttcactgtttaagtcaatttagtttttttttcttttttttgttaaaatgtgttgt--------------------------------

upper sequence: Vv16s0050g01090.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G25700.2 (Arabidopsis thaliana), 5'ss of exon 3
GTAGGCATGGAGTTCTGGGCGAGATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAGgttttcctcctactcctttcctcattcttcttaaacacctctggtcgctgagaaatcttcctggacattttctcggtaaccaaacagtggattttctgtttgatcattctaaaaccttttggattgcag
|| || ||||| |||||||| ||||||||||| | |||||| |||||||| ||  ||||| | ||||| ||||||    | ||       |    |||||  | |      ||   |  |  |          || |  || |  | |                                                     
GTTGGTATGGAATTCTGGGCAAGATGGGCTCATAGAGCTCTGTGGCACGCTTCTCTATGGAATATGCATGAGgttactttgct----tgctgaaaattctcatcatgactatccaatttcaaaccgcctgatttgaattttgttgcag-----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110362018|gb|EC925524.1|EC925524
EST:     GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAG                         TCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCG
genomic: GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAGgttttcctcc ... tggattgcagTCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCG
EST: gi|110387779|gb|EC952475.1|EC952475
EST:     GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAG                         TCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCG
genomic: GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAGgttttcctcc ... tggattgcagTCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCG
EST: gi|34549741|gb|CF517973.1|CF517973
EST:     GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAG                         TCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCG
genomic: GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAGgttttcctcc ... tggattgcagTCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCG
EST: gi|34544824|gb|CF513056.1|CF513056
EST:     GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAG                         TCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCG
genomic: GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAGgttttcctcc ... tggattgcagTCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCG
EST: gi|110422537|gb|EC988863.1|EC988863
EST:     GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAG                         TCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCG
genomic: GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAGgttttcctcc ... tggattgcagTCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCG
EST: gi|110388927|gb|EC953729.1|EC953729
EST:     GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAG                         TCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCG
genomic: GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAGgttttcctcc ... tggattgcagTCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCG
EST: gi|110362556|gb|EC926099.1|EC926099
EST:     GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAG                         TCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCG
genomic: GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAGgttttcctcc ... tggattgcagTCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCG