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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATTATGCCATATCACTTCCACAACGAGTCAATCCTGCTATCTTGGGCTTAATACTTGATTACTGTCGGTTTCATCAAGTACCAGGTCGCTCAAATAAGgtctgatatgttctttctcatgtgaatgccctatgcttgtcttagattctaatcaaggatatttaactattcattttgtggaatggggattgggactgggttgagatggcaattgcataagataaccaaactgatcagttgaactttatttgaatttaatttttcttttgtctag

Basic information

species Vitis vinifera
transcript Vv16s0050g00720.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g00720.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os03g01660.1 (Oryza sativa), 5'ss of exon 3
AAATTATGCCATATCACTTCCACAACGAGTCAATCCTGCTATCTTGGGCTTAATACTTGATTACTGTCGGTTTCATCAAGTACCAGGTCGCTCAAATAAGgtctgatatgttc-----tttctcatgtgaatgccctatgcttgtcttagattctaatcaaggatatttaactattcattttgtg-gaatggggattgggactgggttgagatggcaattgcataagataaccaaactgatcagttgaactttatttgaatttaatttttcttttgtctag
|||| |||| ||  | || ||| || |||| || ||| | |  ||| | || || ||||| || ||||||||||||||||| ||||| |||||||| ||||| ||   || |      ||| || | ||    | |  |  ||         |||  ||       || |    | ||  |  ||  | |   ||                                                                                      
AAATCATGCAATTGCTCTCCCAGAAAGAGTTAACCCTACAAGTTTGAGTTTGATTCTTGACTATTGTCGGTTTCATCAAGTCCCAGGGCGCTCAAACAAGgtatgtcgtgatttaagttttgtcttctggcaactccctttttactgctttctctcttctgcttgtttcaggcgtccacctgttgcaagtatagaccatt---------------------------------------------------------------------------------

upper sequence: Vv16s0050g00720.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G30080.2 (Glycine max), 5'ss of exon 2
AAATTATGCCATATCACTTCCACAACGAGTCAATCCTGCTATCTTGGGCTTAATACTTGATTACTGTCGGTTTCATCAAGTACCAGGTCGCTCAAATAAGgtctgatatgttctt--tctcatgtgaatgccctatgcttgtcttagattctaatc--aaggatatttaactattcattttgtggaatggggattgggactgggttgagatggcaattgcataagataaccaaactgatcagttgaactttatttgaatttaatttttcttttgtctag
||| ||||| ||||| ||||||||||| ||||||||||| |||||||| || |||||||| |||||||||||||| ||||||||||| |  || || |||||| |  ||  || |    |||||||| |    |   ||| | ||  |   | ||   | | |||| ||  | |      ||    ||     |   ||||                                                                              
AAACTATGCTATATCTCTTCCACAACGTGTCAATCCTGCAATCTTGGGATTGATACTTGACTACTGTCGGTTTCACCAAGTACCAGGACATTCTAACAAGgtcaggaataatcctaccttcatgtgattctttttacctttttttttaccttgattttaggaatatatatttttcaggactgctccattatt-tgaagact------------------------------------------------------------------------------

upper sequence: Vv16s0050g00720.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G25090.1 (Glycine max), 5'ss of exon 2
AAATTATGCCATATCACTTCCACAACGAGTCAATCCTGCTATCTTGGGCTTAATACTTGATTACTGTCGGTTTCATCAAGTACCAGGTCGCTCAAATAAGgtctgatatgttctt--tctcatgtgaatgccctatgcttgtcttagattctaatcaaggatattt--aactattcattttgtggaatggggattgggactgggttgagatggcaattgcataagataaccaaactgatcagttgaactttatttgaatttaatttttcttttgtctag
|| |||||| ||||| ||||||||||| ||||||||||| || ||||| || |||||||| |||||||||||||| ||||||||||| |  || || ||||||||  |   || |  | ||||||||      | |  ||  |||| ||| ||   |   ||||||   | || ||||    |    ||  || | ||     |||                                                                         
AACTTATGCTATATCTCTTCCACAACGTGTCAATCCTGCAATGTTGGGTTTGATACTTGACTACTGTCGGTTTCACCAAGTACCAGGGCATTCTAACAAGgtctggaacaatcctactttcatgtga-----ttctttttacctta-attttagggatatatatttttcagtactcatcc-attatttgaagacttggtgcttgtta------------------------------------------------------------------------