Sequence
atgc intronic sequence ATGC exonic sequenceGCGCCTTCAGAGTCTTACAGAGAAACAAGCTCAGAAAATTGCAGAAAACACATTGTACATAAAGGAGTTGGAAGACAGAGAGATGGTGTTTGCTCAAAATgtaattatttgtctgggaaatgaatgagagatggctattctctttctgtgttttattattcctcattacccttctatttgttttgtttttctgtaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g00680.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G37810.1 (Glycine max), 5'ss of exon 3
GCGCCTTCAGAGTCTTACAGAGAAACAAGCTCAGAAAATTGCAGAAAACACATTGTACATAAAGGAGTTGGAAGACAGAGAGATGGTGTTTGCTCAAAATgtaattatttgtctgggaaatgaatgagagatggctattctctttctgtgttttattattcctcattacccttctatttgttttgtttttctgtaag
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GCGCCTCCAGTGTCTCACAGAGAAACAGGCCAAAGAAATTGAAGAAAACAAACTCTACATTAAGGAGTTAGAAGACAGAGAGAGAATTTTGGCTCAAAATgtaatcacctgcttaatcaattactgaaa--taatagttccctaatcaagctctttttcttactagtctttttctttatgtct-gacttgccaaaag
upper sequence: Vv16s0050g00680.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G30020.1 (Glycine max), 5'ss of exon 3
GCGCCTTCAGAGTCTTACAGAGAAACAAGCTCAGAAAATTGCAGAAAACACATTGTACATAAAGGAGTTGGAAGACAGAGAGATGGTGTTTGCTCAAAATgtaattatttgtctgggaaatgaatgagagatggctattctctt-tctgtgttttattattcctcattacccttctatttgttttgtttttctgtaag
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GCGCCTCCAGTGTCTCACAGAGAAACAGGCCAAAGAAATTGAAGAAAACAAACTCTACATTAAGGAGTTAGAAGATAGAGAGAGAATTTTGGCTCAAAATgtaatcacctacttgatcaattactgaaa--taatagttccctaatcaaagctctttttcttactagccttttcctttttgtctgacttgtgaaaag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34546747|gb|CF514979.1|CF514979EST: CATTGTACATAAAGGAGTTGGAAGACAGAGAGATGGTGTTTGCTCAAAAT GTTGAAGAACTCCTCTTGGAAATGAAAGAAACCGAAGAAGAGGTTGCTAGA
genomic: CATTGTACATAAAGGAGTTGGAAGACAGAGAGATGGTGTTTGCTCAAAATgtaattattt ... tttctgtaagGTTGAAGAACTCCTCTTGGAAATGAAAGAAACCGAAGAAGAGGTTGCTAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCGCCTTCAGAGTCTTACAGAGAAACAAGCTCAGAAAATTGCAGAAAACACATTGTACATAAAGGAGTTGGAAGACAGAGAGATGGTGTTTGCTCAAAATgtaattatttgtctgggaaatgaatgagagatggctattctctttctgtgttttattattcctcattacccttctatttgttttgtttttctgtaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG