1 5' 3' | 2 5' 3' | 3 5' 3' |
GAAGATATCACCAATCGAAGTGGATGCTGTCCTTTTATCACATCCAGACATTGCTCAAGCGGTTGCTTTTGGGGTTCCAGATGACAAATACGGCGAAGAGgtaagaaccgtaattccccattctttaattgctatcaacaccaatttattagaagggataaccaatgagatgaaatcatctccactttggacaaagcatg...
species | Vitis vinifera |
transcript | Vv16s0050g00390.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGCTCAAGCGGTCGCTTTTGGGGTTCCAGATGACAAATACGGCGAAGAG ATAAACTGTGCCATCATTCCAAGAGAAGGATCAGACATCGATGAAGCAGAGEST: gi|110373141|gb|EC937354.1|EC937354
genomic: TTGCTCAAGCGGTTGCTTTTGGGGTTCCAGATGACAAATACGGCGAAGAGgtaagaaccg ... aaatgaatagATAAACTGTGCCATCATTCCAAGAGAAGGATCAGACATCGATGAAGCAGAG
EST: TTGCTCAAGCGGTTGCTTTTGGGGTTCCAGATGACAAATATGGCGAAGAG ATAAACTGTGCCATCATTCCAAGAGAAGGATCAGACATTGATGAAGCAGAGEST: gi|110383709|gb|EC948098.1|EC948098
genomic: TTGCTCAAGCGGTTGCTTTTGGGGTTCCAGATGACAAATACGGCGAAGAGgtaagaaccg ... aaatgaatagATAAACTGTGCCATCATTCCAAGAGAAGGATCAGACATCGATGAAGCAGAG
EST: TTGCTCAAGCGGTTGCTTTTGGGGTTCCAGATGACAAATATGGCGAAGAG ATAAACTGTGCCATCATTCCAAGAGAAGGATCAGACATTGATGAAGCAGAGEST: gi|110407659|gb|EC973268.1|EC973268
genomic: TTGCTCAAGCGGTTGCTTTTGGGGTTCCAGATGACAAATACGGCGAAGAGgtaagaaccg ... aaatgaatagATAAACTGTGCCATCATTCCAAGAGAAGGATCAGACATCGATGAAGCAGAG
EST: TTGCTCAAGCGGTTGCTTTTGGGGTTCCAGATGACAAATACGGCGAAGAG ATAAACTGTGCCATCATTCCAAGAGAAGGATCAGACATCGATGAAGCAGAGEST: gi|110371806|gb|EC935930.1|EC935930
genomic: TTGCTCAAGCGGTTGCTTTTGGGGTTCCAGATGACAAATACGGCGAAGAGgtaagaaccg ... aaatgaatagATAAACTGTGCCATCATTCCAAGAGAAGGATCAGACATCGATGAAGCAGAG
EST: TTGCTCAAGCGGTTGCTTTTGGGGTTCCAGATGACAAATATGGCGAAGAG ATAAACTGTGCCATCATTCCAAGAGAAGGATCAGACATTGATGAAGCAGAGEST: gi|30329927|gb|CD013189.1|CD013189
genomic: TTGCTCAAGCGGTTGCTTTTGGGGTTCCAGATGACAAATACGGCGAAGAGgtaagaaccg ... aaatgaatagATAAACTGTGCCATCATTCCAAGAGAAGGATCAGACATCGATGAAGCAGAG
EST: TTGCTCAAGCGGTTGCTTTTGGGGTTCCAGATGACAAATACGGCGAAGAG ATAAACTGTGCCATCATTCCAAGAGAAGGATCAGACATCGATGAAGCAGAGEST: gi|83275734|gb|DV939742.1|DV939742
genomic: TTGCTCAAGCGGTTGCTTTTGGGGTTCCAGATGACAAATACGGCGAAGAGgtaagaaccg ... aaatgaatagATAAACTGTGCCATCATTCCAAGAGAAGGATCAGACATCGATGAAGCAGAG
EST: TTGCTCAAGCGGTTGCTTTTGGGGTTCCAGATGACAAATATGGCGAAGAG ATAAACTGTGCCATCATTCCAAGAGAAGGATCAGACATTGATGAAGCAGAGEST: gi|110714911|gb|EE092360.1|EE092360
genomic: TTGCTCAAGCGGTTGCTTTTGGGGTTCCAGATGACAAATACGGCGAAGAGgtaagaaccg ... aaatgaatagATAAACTGTGCCATCATTCCAAGAGAAGGATCAGACATCGATGAAGCAGAG
EST: TTGCTCAAGCGGTTGCTTTTGGGGTTCCAGATGACAAATACGGCGAAGAG ATAAACTGTGCCATCATTCCAAGAGAAGGATCAGACATCGATGAAGCAGAG
genomic: TTGCTCAAGCGGTTGCTTTTGGGGTTCCAGATGACAAATACGGCGAAGAGgtaagaaccg ... aaatgaatagATAAACTGTGCCATCATTCCAAGAGAAGGATCAGACATCGATGAAGCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGATATCACCAATCGAAGTGGATGCTGTCCTTTTATCACATCCAGACATTGCTCAAGCGGTTGCTTTTGGGGTTCCAGATGACAAATACGGCGAAGAGgtaagaaccgtaattccccattctttaattgctatcaacaccaatttattagaagggataaccaatgagatgaaatcatctccactttggacaaagcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggacaaa