Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGTTGGAACGTCTCACTCGTGTCTTTACTCAAAAGATTCATGATCTTATTGGAACTCATACTGATGTACCTGCACCGGACATGGGAACTAATGCTCAGgttatcttttgtctgtaacactcttgaaatattctctcattcatgaagctgaaatatttataaatatgggcag

Basic information

species Vitis vinifera
transcript Vv16s0039g02750.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0039g02750.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os04g45970.1 (Oryza sativa), 5'ss of exon 3
CGAGTTGGAACGTCTCACTCGTGTCTTTACTCAAAAGATTCATGATCTTATTGGAACTCATACTGATGTACCTGCACCGGACATGGGAACTAATGCTCAGgt-tat-cttttgtctgtaacactcttgaaatattctctcattcatgaagctgaaatatttataaatatgg-gcag
 ||| |||| ||| | || ||||| ||||| || || |||||||||||||||||| |||||||||| || || || || ||||||||||||||| | ||||| ||| ||  | ||| ||  | | ||  | || |  |   ||||| | |    |     | ||| | ||   |||
TGAGCTGGAGCGTTTGACACGTGTATTTACACAGAAAATTCATGATCTTATTGGAGCTCATACTGACGTGCCAGCTCCTGACATGGGAACTAATTCACAGgtatattctgctttctctagtatttttctactacttccc--ttcatcatgtaacatcccctgtaattttgacacag

upper sequence: Vv16s0039g02750.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G427097_T02 (Zea mays), 5'ss of exon 3
CGAGTTGGAACGTCTCACTCGTGTCTTTACTCAAAAGATTCATGATCTTATTGGAACTCATACTGATGTACCTGCACCGGACATGGGAACTAATGCTCAGgttatctt----ttgtctgtaacactctt---gaaatattctctcat----tcatgaagctgaaatatttataaatatg-ggcag
 |||||||| ||  | || || || ||||| || || |||||||||||||| ||||| ||||| ||||| ||||| || |||||||| || ||||| || ||   | |    |||  | |   | | ||      ||  ||    ||    |  |  |  || |   |||||  |  || | |||
TGAGTTGGAGCGGTTGACACGAGTATTTACCCAGAAAATTCATGATCTTATCGGAACGCATACAGATGTCCCTGCTCCTGACATGGGGACCAATGCACAAgtaggcctaacattgcttttgttatttttttttgtatgctcagctatcttgtttttcatttgtaccttttatgcaattgtgacag

upper sequence: Vv16s0039g02750.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ36429 (Selaginella moellendorffii), 5'ss of exon 3
CGAGTTGGAACGTCTCACTCGTGTCTTTACTCAAAAGATTCATGATCTTATTGGAACTCATACTGATGTACCTGCACCGGACATGGGAACTAATGCTCAGgttat-----cttttgtctgtaacactcttgaaatattctctcattcat----gaagctgaa-----atatttataaatatgggcag
|||| | || || ||||||||  | || |  || ||||| ||  || ||||||| | |||||| ||||| || ||||| ||||||||||| |||||||||||| |     ||||| | ||       ||  |  | | || || ||  |    |||| || |     || ||| |   | |   |||
CGAGCTAGAGCGGCTCACTCGAATTTTCATACAGAAGATCCACAATGTTATTGGTATTCATACGGATGTTCCAGCACCCGACATGGGAACGAATGCTCAGgtttttctctcttttctttggtttttcctctacttgtcctttcttttctttgcgaagttggattttcatgtttttgtttcttcacag

upper sequence: Vv16s0039g02750.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ06180 (Selaginella moellendorffii), 5'ss of exon 3
CGAGTTGGAACGTCTCACTCGTGTCTTTACTCAAAAGATTCATGATCTTATTGGAACTCATACTGATGTACCTGCACCGGACATGGGAACTAATGCTCAGgttat-----cttttgtctgtaacactcttgaaatattctctcattcat----gaagctgaa-----atatttataaatatgggcag
|||| | || || ||||||||  | || |  || ||||| ||  || ||||||| | |||||| ||||| || ||||| ||||||||||| |||||||||||| |     ||||| | ||       ||  |  | | || || ||  |    |||| || |     || ||| |   | |   |||
CGAGCTAGAGCGGCTCACTCGAATTTTCATACAGAAGATCCACAATGTTATTGGTATTCATACGGATGTTCCAGCACCCGACATGGGAACGAATGCTCAGgtttttctctcttttctttggtttttcctctacttgtcctttcttttctttgggaagttggattttcatgtttttgtttcttcacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30251187|gb|CB968920.1|CB968920
EST:     TTGGAACTCATACTGATGTACCTGCACCGGACATGGGAACTAATGCTCAG                         ACTATGGCATGGATTTTGGACGAGTACTCAAAATTCCATGGTCACTCACCG
genomic: TTGGAACTCATACTGATGTACCTGCACCGGACATGGGAACTAATGCTCAGgttatctttt ... atatgggcagACTATGGCATGGATTTTGGACGAGTACTCAAAATTCCATGGTCACTCACCG
EST: gi|161720824|gb|FC069589.1|FC069589
EST:     TTGGAACTCATACTGATGTACCTGCACCGGACATGGGAACTAATGCTCAG                         ACTATGGCATGGATTTTGGACGAGTACTCAAAATTCCATGGTCACTCACCG
genomic: TTGGAACTCATACTGATGTACCTGCACCGGACATGGGAACTAATGCTCAGgttatctttt ... atatgggcagACTATGGCATGGATTTTGGACGAGTACTCAAAATTCCATGGTCACTCACCG
EST: gi|161712921|gb|FC062394.1|FC062394
EST:     TTGGAACTCATACTGATGTACCTGCACCGGACATGGGAACTAATGCTCAC                         ACTATGGCATGGATTTTGGACGAGTACTCAAAATTCCATGGGCACTCACCG
genomic: TTGGAACTCATACTGATGTACCTGCACCGGACATGGGAACTAATGCTCAGgttatctttt ... atatgggcagACTATGGCATGGATTTTGGACGAGTACTCAAAATTCCATGGTCACTCACCG
EST: gi|156737272|gb|EV241386.1|EV241386
EST:     AACTAATGCTCAG                         ACTATGGCATGGATTTTGGACGAGTACTCAAAATTCCATTGTCACTCACCG
genomic: AACTAATGCTCAGgttatctttt ... atatgggcagACTATGGCATGGATTTTGGACGAGTACTCAAAATTCCATGGTCACTCACCG