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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTGAGGAAGCTGAAACATGAAAATATCATTGAAATGCTCGACTCCTTTGAGACCCCTCAAGAGTTCTGCGTTGTCACAGAATTTGCACAAgtaattagctcttctctctctctctctctctctcttctctgttttgtacttacacatgcaaattcattccatgcgcatctatgcagcagaaagaatgtttcagagatgcaccctaacacaaaatatgcttggttattttgaccatagtttagatgcatgagtagttaatgaaaattttccatatgcag

Basic information

species Vitis vinifera
transcript Vv16s0039g02400.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0039g02400.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G062524_T02 (Zea mays), 5'ss of exon 3
ATTTTGAGGAAGCTGAAACATGAAAATATCATTGAAATGCTCGACTCCTTTGAGACCCCTCAAGAGTTCTGCGTTGTCACAGAATTTGCACAAgtaattagctcttctctctctctctctctctctcttctctgttttgtacttacacatgcaaattcattccatgcgcatctatgcagcagaaa-gaatgtttcagagatgcaccctaacacaaaatatgcttggttattttgaccatagtttagatgcatgagtagttaatgaaaattttccatatgcag
||  | ||||| || |||||||| || || ||||||||| ||||  ||||||| |||||||| ||||| || ||||||||||| ||||| || |||   |     ||  | |   |  || | ||  |||||   ||||     ||   |   ||||  || ||   |  |   |  |    ||| |  ||| ||||                                                                                     
ATCCTAAGGAAACTCAAACATGAGAACATAATTGAAATGATCGATGCCTTTGAAACCCCTCAGGAGTTTTGTGTTGTCACAGAGTTTGCTCAGgtacacaagaactcagtttgattacct-tgtcctttctcatctttg-----actggtttcaattgtttgcagctggctaactctaatgaaaatgcttgtctcag-------------------------------------------------------------------------------------

upper sequence: Vv16s0039g02400.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G22860.1 (Glycine max), 5'ss of exon 3
ATTTTGAGGAAGCTGAAACATGAAAATATCATTGAAATGCTCGACTCCTTTGAGACCCCTCAAGAGTTCTGCGTTGTCACAGAATTTGCACAAgtaattagctcttctctctctctctctctctctcttctctgttttgtacttacacatgcaaattcattccatgcgcatctatgcagcagaaagaatgtttcagagatgcacc-ctaacacaaaatatgcttggttattttgaccatagtttagatgcatgagtagttaatgaaaattttccatatgcag
|| ||  | ||| | || |||| |||||| ||| |||||||||| |||||||| | ||| ||||| || || ||||| |||||||||||||||||||| | || |  | ||  | |  |  | |  ||  |   || | || ||  |  |  | | | |  || |                 ||    || | ||   || | |  ||| |  | | |      ||  | | |||   || |  |||||| ||   || | || | | ||||   | | |||
ATCTTACGAAAGTTAAAGCATGGAAATATTATTCAAATGCTCGATTCCTTTGAAAGCCCGCAAGAATTTTGTGTTGTTACAGAATTTGCACAAgtaatcatctgtattttcagt-tgacggtttgactgttac-ttctatatttgaaagttaacacttacccctt-----------------aataggtgatccaattatactcagctatctgatagtgaaacaggaaactgtgaat-tattagagatgc-tgtcaagctgattatattttttattttacag

upper sequence: Vv16s0039g02400.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G16860.1 (Glycine max), 5'ss of exon 3
ATTTTGAGGAAGCTGAAACATGAAAATATCATTGAAATGCTCGACTCCTTTGAGACCCCTCAAGAGTTCTGCGTTGTCACAGAATTTGCACAAgtaattagctcttctctctctctctctctctctcttctctgttttgtacttac-acatgcaaattcatt--ccatgcgcatctatgcagcagaaagaatgtttcagagatgcaccctaacacaaaatatgcttggttattttgaccatagtttagatgcatgagtagttaatgaaaattttccatatgcag
|| || || ||| |||| |||| |||||| ||| ||||||| || |||||||| | ||| ||||| || || ||||| |||||||||||||||||||| | ||    | ||  |   |  |  | |  |   |  ||   | |||| || | |   || |||    ||     | ||  ||||     || |||   | ||   |||   |  |  | | |||||  |||    |||  ||| |||  ||     ||                           
ATCTTAAGAAAGTTGAAGCATGGAAATATTATTCAAATGCTTGATTCCTTTGAAAGCCCGCAAGAATTTTGTGTTGTTACAGAATTTGCACAAgtaatcatctgcattttcagt---tgacggtttgattgatacttgaaagttaccacttaccccttaattggtgatctaagtatactcagctatctgattgtggaacagg-acactgaattattagagatgct--gttgagctgattatattttttattttgcag---------------------------

upper sequence: Vv16s0039g02400.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G50240.2 (Arabidopsis thaliana), 5'ss of exon 3
ATTTTGAGGAAGCTGAAACATGAAAATATCATTGAAATGCTCGACTCCTTTGAGACCCCTCAAGAGTTCTGCGTTGTCACAGAATTTGCACAAgtaattagctcttctctctctctctctctctctcttctctgttttgtacttacacatgcaaattcattccatgcgcatctatgcagcagaaagaatgtttcagagatgcaccctaacacaaaatatgcttggttattttgaccatagtttagatgcatgagtagttaatgaaaattttccatatgcag
|| ||| ||||||| || ||||| ||||||||||||||||||||||||||||| | | | | ||||||||| || ||||| || ||||| ||||||     || ||||| || |   |       |||          ||||| |   ||| ||    ||  |  |   |  |||     | |||||||      |  |  | |  |   |||                                                                    
ATATTGCGGAAGCTCAAGCATGAGAATATCATTGAAATGCTCGACTCCTTTGAAAACGCACGAGAGTTCTGTGTCGTCACTGAGTTTGCCCAAgta-----cttttctcactgtagattgtagaatctaaa-------gtactgatttatg-aagcatatagctag---acttatatgaaataaagaatcaccatggaacacccaattttacag-------------------------------------------------------------------