Sequence
atgc intronic sequence ATGC exonic sequenceAAAGCCAGATGGTTGGTAATGTCTTCACCAGTGTTGCTTCAAGTTACGATCTCATGAATGATTTGATGAGTGGTGGATTGCATAGATTATGGAAGGATAGgtttgaatcttgctgttgtgctcaaatagttatttcaaattatgatgctttgcttctatattagtttatttttgcttaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0039g01590.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g74520.1 (Oryza sativa), 5'ss of exon 2
AAAGCCAGATGGTTGGTAATGTCTTCACCAGTGTTGCTTCAAGTTACGATCTCATGAATGATTTGATGAGTGGTGGATTGCATAGATTATGGAAGGATAGgtttg-----aatcttgctgttgtgctcaaatagtt-atttcaaa-ttatgatgctttgcttctatattagtttatttttgcttaacag
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AAAGCAAATTGGTCGGTAACGTCTTCAGCAGCGTCGCCTCCAGTTACGATCTCATGAACGATCTTATGAGCGTTGGACTACATAGGTTGTGGAAGGACAGgtttgcttccaatctcctcctcctcctcctttttttcatgtcaggcttaccacattcctcttctctattttttaag-------------
upper sequence: Vv16s0039g01590.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G03210.2 (Glycine max), 5'ss of exon 1
AAAGCCAGATGGTTGGTAATGTCTTCACCAGTGTTGCTTCAAGTTACGATCTCATGAATGATTTGATGAGTGGTGGATTGCATAGATTATGGAAGGATAGgtttgaatcttgctgttgtgctcaaatagttatttcaaattatgatgct-ttgcttctatattagttta--tttttgcttaacag--------
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AGGCTCGCATGGTTGGTGATGTCTTCACGAGTGTTGCTTCAAGCTACGATCTCATGAATGACCTAATGAGTGTTGGATTGCATAGATTGTGGAAGGATAGgttacaacattacattctcattttcataatagtttcaa-tcatattactgttgctttggactttgcttaaatctgtgattattttctgctcag
upper sequence: Vv16s0039g01590.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G22890.1 (Glycine max), 5'ss of exon 2
AAAGCCAGATGGTTGGTAATGTCTTCACCAGTGTTGCTTCAAGTTACGATCTCATGAATGATTTGATGAGTGGTGGATTGCATAGATTATGGAAGGATAGgtttgaatcttgctgttgtgctcaaatagttatttcaaattatgatgct-ttgcttctata-ttagttta--tttttgcttaacag--------
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AGGCTCGCATGGTTGGTGACGTATTCACGAGCGTTGCTTCAAGCTACGATCTCATGAATGACCTAATGAGTGCTGGTTTGCATAGATTGTGGAAGGATAGgttacagcattacattctcatttcttcaattgtttcaatct-tgttgctattgctgttggactttgcttaaatctgtgattattttctgctcag
upper sequence: Vv16s0039g01590.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G57300.3 (Arabidopsis thaliana), 5'ss of exon 3
AAAGCCAGATGGTTGGTAATGTCTTCACCAGTGTTGCTTCAAGTTACGATCTCATGAATGATTTGATGAGTGGTGGATTGCATAGATTATGGAAGGATAGgtttgaatcttgctgttgtgctcaaatagttatttcaaattatgatgctttg---cttctatattagtttatttttgcttaacag
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AAAGCAAATTGGTTGGTAATGTATTCACCAATGTAGCTTCGAGTTATGATATTATGAATGATGTGATGAGTGGTGGTTTGCATAGGCTATGGAAGGAAAGgttagactccgtgacacgtttatcactagtgttatgaattgctcttgtgtaaaaattgacacttttgttggtcttgtgatttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110709114|gb|EE084301.1|EE084301EST: CTCATGAATGATTTGATGAGTGGTGGATTGCATAGATTATGGAAGGATAG GTTGGTCTCTAAATTGCATCCATTTCCTGGAATGAAGCATCTTGATGTGGC
genomic: CTCATGAATGATTTGATGAGTGGTGGATTGCATAGATTATGGAAGGATAGgtttgaatct ... tgcttaacagGTTGGTCTCTAAATTGCATCCATTTCCTGGAATGAAGCATCTTGATGTGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAGCCAGATGGTTGGTAATGTCTTCACCAGTGTTGCTTCAAGTTACGATCTCATGAATGATTTGATGAGTGGTGGATTGCATAGATTATGGAAGGATAGgtttgaatcttgctgttgtgctcaaatagttatttcaaattatgatgctttgcttctatattagtttatttttgcttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG