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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACTATATCAGTCATCACAAATGATGGTCGAAATATAGTGgtatgttatatagaattaattcaatgcagtgacagcattttttatggtaggtctatattgtattgacattggttttccgtttag

Basic information

species Vitis vinifera
transcript Vv16s0039g00240.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0039g00240.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G18410.1 (Glycine max), 5'ss of exon 3
AAACTATATCAGTCATCACAAATGATGGTCGAAATATAGTGgtatgtt---atata-gaattaattcaatgcagtgacagcattttttatggtaggtctatattgtattgacattggttttccgtttag
| || || |||||||| ||||||||||| ||||||||||||||| | |    |||| |||  || | | ||          | |   | |  | | ||||  || || | ||| || ||||  ||| ||
AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagctttagtatatgaacaaaattactgtttgtgtgttaataagtgtcattgctctaacttctaattacaatgcttttttgttcag

upper sequence: Vv16s0039g00240.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G40590.1 (Glycine max), 5'ss of exon 3
AAACTATATCAGTCATCACAAATGATGGTCGAAATATAGTGgtatgttatatagaattaattcaatgcagtgacagcattttttatggtaggtctata--ttgtattgacattggttttccgtttag---------------
| || || |||||||| ||||||||||| ||||||||||||||| | | ||    || |||  ||   ||     | ||| ||| | ||  ||  |||  |   ||||   |   || ||  |  |                
AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagctttagtatat-aatcaaaattagctcttg-attatttgtagtgtgttaataagtgtcattgctctaacttctcaatacaatgactttttgttcag