Sequence
atgc intronic sequence ATGC exonic sequenceACTCAGAGCTGATGGTGAACGAGAATTTTTGTTTTTCCGTAATCCAAGCGCTGATATGCTTTTCCATGAATCAGAACTTGATTTAAAACTTCTTGAGCAGgtatgtatgcgagtgtacattttttcttttccttaatttttattgtgaaatggagcacaacctttttgttttttctttttttcttttctagcagaggagctaatttggttaaaaattttgcattttctaaataattttgaatgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0022g02340.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G32530.1 (Glycine max), 5'ss of exon 3
ACTCAGAGCTGATGGTGAACGAGAATTTTTGTTTTTCCGTAATCCAAGCGCTGATATGCTTTTCCATGAATCAGAACTTGATTTAAAACTTCTTGAGCAGgtatgtatgcgagtgtacattttttcttttccttaatttttattgtgaaatggagcacaacctttttgtt-ttttctttttttcttttctagcagaggagctaatttggttaaaaattttgcattttctaaataattttgaatgtag
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ACTTAGAGCGGATGGAGAACGTGAATTCTTGTTTTTCCGCAATCCAAGCGCTGATATGCTCCTTCAAGAGTCAGAACTTGATAAAGATATCCTAAAGCAGgtgtttg-----gaatatctgtttgtattttatgaaatgctgctctgagacc---tttgatctaatcatgattttcataacattgattttag-------------------------------------------------------
upper sequence: Vv16s0022g02340.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G27430.1 (Glycine max), 5'ss of exon 3
ACTCAGAGCTGATGGTGAACGAGAATTTTTGTTTTTCCGTAATCCAAGCGCTGATATGCTTTTCCATGAATCAGAACTTGATTTAAAACTTCTTGAGCAGgtat---gtatgcgagtgtacatttt-----ttcttttccttaatttttattgtgaaatggagcacaacctttttgttttttctttttttcttttctagcagaggagctaatttggttaaaaattttgcattttctaaataattttgaatgtag
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ACTTAGAGCGGATGGCGAACGTGAGTTCTTGTTTTTCCGCAATCCAAGCGCTGATATGCTCCTTCAAGAGTCAGAACTTGATAAAGATCTCCTAAAGAAGgtgttttgaatatctgtttgtattttatgaaatgtctcccccaagatctttggtctaagtcaggatattcatattattttcag-----------------------------------------------------------------------
upper sequence: Vv16s0022g02340.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G38570.1 (Glycine max), 5'ss of exon 3
ACTCAGAGCTGATGGTGAACGAGAATTTTTGTTTTTCCGTAATCCAAGCGCTGATATGCTTTTCCATGAATCAGAACTTGATTTAAAACTTCTTGAGCAGgtatgtatgcgagtgtacattttttcttttccttaatttttattgtgaaatggagcacaacctttttgttttttctttttttcttttctagcagaggagctaatttggttaaaaattttgcattttctaaataattttgaatgtag
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ACTTAGAGCTGATGGTGAGCGCGAGTTCTTGTTTTTCCGAAATCCTAGTGCTGATATGCTACTTCAAGAGTCAGAACTTGATGAAAATCTCATAAAGAAGgtgttt---tgaatttctgtctgtatttataaa-aatttaacctaagagctttggtttaag---tccagatactcatgatattgattgcag-------------------------------------------------------
upper sequence: Vv16s0022g02340.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G29270.1 (Glycine max), 5'ss of exon 3
ACTCAGAGCTGATGGTGAACGAGAATTTTTGTTTTTCCGTAATCCAAGCGCTGATATGCTTTTCCATGAATCAGAACTTGATTTAAAACTTCTTGAGCAGgtatgtatgcgagtgtacattttttcttttccttaatttttattgtgaaatggagcacaacctttttgttttttctttttttcttttctagcagaggagctaatttggttaaaaattttgcattttctaaataattttgaatgtag
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ACTTAGAGCTGATGGTGAGCGTGAGTTCTTGTTTTTCCGAAATCCTAGTGCTGATATGCTACTTCAAGAGTCCGAGCTTGATAAAAATCTCATAAAGAAGgtgttt-------tgaatttctgtctatatttataaaatgtaacctaa----gagctttggtttaagtccagatactcatgatattgatcgcag----------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71857203|gb|DT006258.1|DT006258EST: CTGATATGCTTTTCCATGAATCAGAACTTGATTTAAAACTTCTTGAGCAG GCAAAAATCTTTCACTATGGTTCAATTAGTTTGATTGAGGAACCATGTAGG
genomic: CTGATATGCTTTTCCATGAATCAGAACTTGATTTAAAACTTCTTGAGCAGgtatgtatgc ... ttgaatgtagGCAAAAATCTTTCACTATGGTTCAATTAGTTTGATTGAGGAACCATGTAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTCAGAGCTGATGGTGAACGAGAATTTTTGTTTTTCCGTAATCCAAGCGCTGATATGCTTTTCCATGAATCAGAACTTGATTTAAAACTTCTTGAGCAGgtatgtatgcgagtgtacattttttcttttccttaatttttattgtgaaatggagcacaacctttttgttttttctttttttcttttctagcagaggagctaatttggttaaaaattttgcattttctaaataattttgaatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG