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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTATTAACCTCTGGTGCAACTCCTGCCATTGAGACACTCTGCTTCTGCTTGGCTGACCAAGGGAATGCATTTCTTGTTCCCACTCCATATTACCCAGGgtaatttatgttctcttcattttaagtcatttcaactcataaaccaaaatatctaatcacatgttaagccaaattttgattctgactttttatacaaagaattctgttgtggagcttgattagaaaacttttatgcag

Basic information

species Vitis vinifera
transcript Vv16s0022g02010.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os06g03990.1 (Oryza sativa), 5'ss of exon 3
TGGTATTAACCTCTGGTGCAACTCCTGCCATTGAGACACTCTGCTTCTGCTTGGCTGACCAAGGGAATGCATTTCTTGTTCCCACTCCATATTACCCAGGgtaatttatgttctcttcattttaagt-catttcaactcataaaccaaaatatctaatcacatgttaagccaaattttgattctgactttttatacaaagaattctgttgtggagcttgattagaaaacttttatgcag
||||  |||| ||||||||||||||||| || || | |||  | |||||| | ||||| | ||| |||||||||||||||||  | ||||| ||||| ||||| | | | |||||     | || || ||| |  |   |   |    ||    | |  |  |  |||     | ||   |||||                                                      
TGGTTATAACATCTGGTGCAACTCCTGCAATGGAAATACTGAGTTTCTGCCTTGCTGATCCAGGAAATGCATTTCTTGTTCCATCACCATACTACCCTGGgta-tgtctcttctccaatctctaggttcatctgtatgaacgtattggaag---tga--aggtactaactgtcacttcatttctgcag---------------------------------------------------

upper sequence: Vv16s0022g02010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G28000.1 (Glycine max), 5'ss of exon 3
TGGTATTAACCTCTGGTGCAACTCCTGCCATTGAGACACTCTGCTTCTGCTTGGCTGACCAAGGGAATGCATTTCTTGTTCCCACTCCATATTACCCAGGgtaatttatg---ttctcttcattttaagtcatttcaactcataaaccaaaatatctaatcacatgttaagccaaattttgattctgactttttatacaaagaattctgttgtggagcttgattagaaaacttttatgcag
||||| ||||  |||| ||||||||||| ||||||| | | | |||||| ||||| ||||| || |||||||| ||||| || || |||||||| ||||||||||  |||    | |||| |  ||  ||  ||  || | ||    | || | |  || |  || | ||   || | |  |                                                           
TGGTACTAACAGCTGGGGCAACTCCTGCTATTGAGATATTGTCCTTCTGTTTGGCAGACCATGGAAATGCATTCCTTGTCCCTACACCATATTATCCAGGgtaatcaatggaactttcttgagcttgtgt--ttctaatttattgtgctaattttaaaagctaatttaaaaggaactatacag----------------------------------------------------------

upper sequence: Vv16s0022g02010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G32860.1 (Glycine max), 5'ss of exon 4
TGGTATTAACCTCTGGTGCAACTCCTGCCATTGAGACACTCTGCTTCTGCTTGGCTGACCAAGGGAATGCATTTCTTGTTCCCACTCCATATTACCCAGGgtaatttatg---ttctcttcattttaagtcatttcaactcataaaccaaaatatctaatcacatgttaagccaaattttgattctgactttttatacaaagaattctgttgtggagcttgattagaaaacttttatgcag
||||| ||||  |||| ||||||||||| ||||||| | | | |||||| ||||| ||||| || |||||||| ||||| || || |||||||| || |||||||  |||    | |||  |  ||  ||  ||  || | ||    | || | |  || |  || ||||    |||| ||                                                            
TGGTACTAACAGCTGGGGCAACTCCTGCAATTGAGATATTGTCCTTCTGTTTGGCAGACCATGGAAATGCATTCCTTGTCCCTACACCATATTATCCTGGgtaatcaatggaactttctcgagcttgtgt--ttctaatttattgtgctaattttaaaacctaat-ttaaaaggaattatgcag---------------------------------------------------------