1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATGCGTGCTACTGTGAGAAACGTGGCTAAGTTTTTCCCAACCGCAATAATTAGTGGAAGAAGTCGGGATAAGgtaattggcaggcttttgagtgtgtgctattattttaaaatcattatggcaatttcctcccatttatatcagttttccttctatagatggtttttcatcttcactgacttgttacgtaacctactattcatttag
species | Vitis vinifera |
transcript | Vv16s0022g00660.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAAGTCGGGATAAG GTATATAATTGANGTGGGACTAACAGAGCTCTACTACGCTGGTAGTCATGGEST: gi|110365313|gb|EC928101.1|EC928101
genomic: GAAGTCGGGATAAGgtaattggca ... attcatttagGTGTATAATT-TTGTGGGACTAACAGAGCTCTACTACGCTGGTAGTCATGG
EST: TGGCTAAATTTTTCCCAACCGCAATAATTAGTGGAAGAAGTCGGGATAAG GTATATAATTTTGTGGGACTAACAGAGCTCTACTACGCTGGTAGTCATGGG
genomic: TGGCTAAGTTTTTCCCAACCGCAATAATTAGTGGAAGAAGTCGGGATAAGgtaattggca ... attcatttagGTGTATAATTTTGTGGGACTAACAGAGCTCTACTACGCTGGTAGTCATGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCGTGCTACTGTGAGAAACGTGGCTAAGTTTTTCCCAACCGCAATAATTAGTGGAAGAAGTCGGGATAAGgtaattggcaggcttttgagtgtgtgctattattttaaaatcattatggcaatttcctcccatttatatcagttttccttctatagatggtttttcatcttcactgacttgttacgtaacctactattcatttag
- - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT