Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAAATTTTGTTAGCCCAGAAGACGTGGTAGCACAAAAAgtaggtgacttttgttttttgtttcttttatgtttttctttttgtgttcctcctttactacttactatgttttttcttcag

Basic information

species Vitis vinifera
transcript Vv16s0013g01140.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71865185|gb|DT014240.1|DT014240
EST:     GAAAAATTTTGTTAGCCCAGAAGACGTGGTAGCACAAAAA                         ATTGTTGTTCAAAAGGGAAGTCCTAGAGGAGTTCATTTTCGGTGAGCAGGG
genomic: GAAAAATTTTGTTAGCCCAGAAGACGTGGTAGCACAAAAAgtaggtgact ... ttttcttcagATTGTTGTTCAAAAGGGAAGTCCTAGAGGAGTTCATTTTCGGCGAGCAGGG
EST: gi|161720049|gb|FC068340.1|FC068340
EST:     GAAAAATTTTGTTAGCCCAGAAGACGTGGTAGCACAAAAA                         ATTGTTGTTCAAAAGGGAAGTCCTAGAGGAGTTCATTTTCGGCGAGCAGGG
genomic: GAAAAATTTTGTTAGCCCAGAAGACGTGGTAGCACAAAAAgtaggtgact ... ttttcttcagATTGTTGTTCAAAAGGGAAGTCCTAGAGGAGTTCATTTTCGGCGAGCAGGG