Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACCATCGCCCTCGATCAGGTGTATGGAAAGGGACAAGTGGTGGGGAGGTCATTTCTTTTAGTGGTTGTGATGATCATCAAATCTCCATTGATACACGAgtaagcaatataaattctaatattcttatcttaatttcttttaattcaacttgactatcaaagatatttctctaactcacaatgaaaaccaaactttaaagctaatgctttgtgatatatag

Basic information

species Vitis vinifera
transcript Vv16s0013g00210.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0013g00210.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G155422_T01 (Zea mays), 5'ss of exon 3
AGACCATCGCCCTCGATCAGGTGTATGGAAAGGGACAAGTGGTGGGGAGGTCATTTCTTTTAGTGGTTGTGATGATCATCAAATCTCCATTGATACACGAgtaagcaatataaattctaatattcttatcttaatttcttttaattcaacttgactatcaaagatat-ttctctaactcacaatgaaaaccaaactttaaagctaatgctttgtgatatatag
||| || || || | ||| ||||| |||||||| || |||||||||||||  ||||| |||||||||||||||||| |||| | |||    |||||         |  | ||| |||||  || |       |||||  |  |          | |||| | | | | |||| ||| | |  | |  |  |    |      ||  ||     | ||      
AGATCACCGACCACCATCTGGTGTCTGGAAAGGCACTAGTGGTGGGGAGGCTATTTCATTTAGTGGTTGTGATGATGATCAGACCTCTGCAGATAC---------CTCTgtaagttctag-atccactctacaatttactgcagc--------agtatctatgttctattctttaaattatgaggtgagtctgtttaggggactgctggcagatcatc-----

upper sequence: Vv16s0013g00210.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G035928_T01 (Zea mays), 5'ss of exon 3
AGACCATCGCCCTCGATCAGGTGTATGGAAAGGGACAAGTGGTGGGGAGGTCATTTCTTTTAGTGGTTGTGATGATCATCAAATCTCCATTGATACACGAgtaagcaatataaattctaatattcttatcttaatttcttttaattcaacttgactatcaaagatatttctctaactcacaatgaaaaccaaactttaaagctaatgctttgtgatatatag
||| || || || ||||| ||||| |||||||| || ||||||||||| |  ||||| |||||||||||||||||| |||| | |||    |||||    |||||   | || || |     | || | |  ||||| ||  | |    | || ||||    | || | || ||| | |  | |  |  |     || |||  | ||||    |||      
AGATCACCGACCGCGATCTGGTGTCTGGAAAGGCACTAGTGGTGGGGAAGCTATTTCCTTTAGTGGTTGTGATGATGATCAGACCTCTGCAGATACCTCTgtaagt--tctagatccac---tcctcaac--aatttattgcagt----catgtctat--gtgctact-ctttaaattatgaggcgagtctg---tttaagggactgctggcagatc-----