Sequence
atgc intronic sequence ATGC exonic sequenceTGCCCAGTCAATGCAGTGCTCGTATGATCAAAGAGGCAACAGTGTGCCAACTATTCTTCTTATGTTGCAAAAGCGTTTGTATTCGCAAGGAGGTCTGCAGgtatgcttttatttgtgtgctaaattagtttccaaataatttagttactgcttcttacttttaccaaaatttttgagtttctgtttcattcttgtcttggtcaaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0048g02830.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G044495_T01 (Zea mays), 5'ss of exon 2
TGCCCAGT-CAATGCAGTGCTCGTATGATCAAAGAGGCAACAGTGTGCCAACTATTCTTCTTATGTTGCAAAAGCGTTTGTATTCGCAAGGAGGTCTGCAGgtatgcttttatttgtgtgctaaattagtttccaaataatttagttactgcttcttacttttaccaaaatttttgagtttctgtttcattcttgtcttggtcaaag
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-ACCAACTTCCATGCAGTGCTCGTATGATAGAAGAGGAAACAGTGTGCCAACTATACTCTTGACTATGCAAAAGAAGTTATATTCACTTGGGGGTCTTCAGgtaa---------cagatcccaaa---attctgaaatcag--agtggcagc-----attggtactggttgttctgattttttttcttgttctaacag---------
upper sequence: Vv15s0048g02830.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G44820.1 (Glycine max), 5'ss of exon 2
TGCCCAGTCAATGCAGTGCTCGTATGATCAAAGAGGCAACAGTGTGCCAACTATTCTTCTTATGTTGCAAAAGCGTTTGTATTCGCAAGGAGGTCTGCAGgtatgcttttatttgtgtgctaaattagtttccaaataatttagttactgcttcttacttttaccaaaatttttgagtttctgtttcattcttgtcttggtcaaag--
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TGCAAAGTCAATGCAGTGCTCTTATGATGAAAGGGGGAACAGTGTCCCAACGATTCTGCTGATGATGCAAAAGCGATTGTATTCAGAGGGTGGCCTTAAAgtatg-ttatgtttgttctttaaa--agcatttaattggttt---tgcttttccataattgctctttagctacaggataccggtatgctggctgaatta--taaacct
upper sequence: Vv15s0048g02830.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G42090.1 (Glycine max), 5'ss of exon 2
TGCCCAGTCAATGCAGTGCTCGTATGATCAAAGAGGCAACAGTGTGCCAACTATTCTTCTTATGTTGCAAAAGCGTTTGTATTCGCAAGGAGGTCTGCAGgtatgcttttatttgtgtgctaaattagtttccaaataatttagttactgcttcttacttttaccaaaatttttgagtttctgtttcattct--tgtcttggtcaaag
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TGCAAAGTCAATGCAGTGCTCTTATGATGAAAGGGGGAACAGTGTCCCAACGATTCTGCTGATGATGCAAAAGCGATTGTATTCAGAGGGAGGCCTTAAAgtatg-ttctgtttgtgta--gaataaattttaaaagcatttaattggt----tttactttt-ccgtaatttctctttcgccacagaataccggtatgctggccgaatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713125|gb|FC062483.1|FC062483EST: CTATTCTTCTTATGTTGCAAAAGCGTTTGTATTCGCAAGGAGGTCTGCAG GCAGAAGGAATATTCCGAATAAATGCTGAGAATGGGCAAGAAGAGTATGTC
genomic: CTATTCTTCTTATGTTGCAAAAGCGTTTGTATTCGCAAGGAGGTCTGCAGgtatgctttt ... ttggtcaaagGCAGAAGGAATATTCCGAATAAATGCTGAGAATGGGCAAGAAGAGTATGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCCCAGTCAATGCAGTGCTCGTATGATCAAAGAGGCAACAGTGTGCCAACTATTCTTCTTATGTTGCAAAAGCGTTTGTATTCGCAAGGAGGTCTGCAGgtatgcttttatttgtgtgctaaattagtttccaaataatttagttactgcttcttacttttaccaaaatttttgagtttctgtttcattcttgtcttggtcaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG