Sequence
atgc intronic sequence ATGC exonic sequenceTTTGAAATGCATGTTGAAAGGGGCCGCTGACTTTCTTGTCAAGCCTGTTAGGAAGAATGAGCTGAGGAACCTATGGCAGCATGTTTGGAGAAGGCATGCAgtaagtttaatttgctcaattttccttctccagcattggttgggattgctccgtttcctagtttgatttttttcacacaactttcactgattttttccttaatatttttttaattttctcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0048g02540.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os09g36220.2 (Oryza sativa), 5'ss of exon 3
TTTGAAATGCATGTTGAAAGGGGCCGCTGACTTTCTTGTCAAGCCTGTTAGGAAGAATGAGCTGAGGAACCTATGGCAGCATGTTTGGAGAAGGCATGCAgtaagttta---atttgctcaattttccttctccagcattggttgggattgctccgtttcctagtttgatttttttcacacaactttcactgattttttccttaatatttttttaattttctcag---
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TTTCAAATGCATGCTAAAGGGTGCTGCAGATTTCCTTGTTAAGCCAATACGGAAGAATGAATTAAGGAACTTATGGCAGCATGTTTGGAGAAAACAACTGgtaagatcacatatttgcaacgttttagcatgactacatttgctt---tctcgtttttatatattaaaatttggattctgcatttttcacaaaactaatcaacaaacttcaattactctgttttacag
upper sequence: Vv15s0048g02540.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G44970.1 (Glycine max), 5'ss of exon 4
TTTGAAATGCATGTTGAAAGGGGCCGCTGACTTTCTTGTCAAGCCTGTTAGGAAGAATGAGCTGAGGAACCTATGGCAGCATGTTTGGAGAAGGCATGCAgtaagtttaatttgctcaattttccttctccagcattggttgggattgctcc-gtttccta-gtttgatttttttcacacaactttcactgattttttccttaatatttt--tttaattttctcag-----
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GTTTAAATGCATGTTAAAAGGTGCAGCTGATTTTCTTATAAAACCTGTTCGCAAGAATGAGCTAAGAAACTTGTGGCAGCATGTATGGAGAAGGCACGCCgtatgtcatgttc-ttcaatttttttctggcaacctt--ttgatatttcttttgtctgttaagtgtgggcttactaatttgacttatatttacttttcttttcttgtttcaatttaatttttttaatacag
upper sequence: Vv15s0048g02540.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G05530.1 (Glycine max), 5'ss of exon 4
TTTGAAATGCATGTTGAAAGGGGCCGCTGACTTTCTTGTCAAGCCTGTTAGGAAGAATGAGCTGAGGAACCTATGGCAGCATGTTTGGAGAAGGCATGCAgtaagtttaatttgctcaattttccttctccag-cattggttgggattgct---ccgtttcctagtttgattt---ttttcacacaactttcactgattttttccttaatattt-tttta----attttctcag
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ATTGAAATGCATGTTAAAAGGGGCAGTTGATTTTCTTATAAAACCCATTCGGAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACGCTgtatgtcatattt--tcagtcctgtttaaagagataattttttgtatttttttttcttcttttatcttggcttgctattttagcgtatatttacttattctttctatcctctctgctgtataatatttattcag
upper sequence: Vv15s0048g02540.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G02050.1 (Glycine max), 5'ss of exon 3
TTTGAAATGCATGTTGAAAGGGGCCGCTGACTTTCTTGTCAAGCCTGTTAGGAAGAATGAGCTGAGGAACCTATGGCAGCATGTTTGGAGAAGGCATGCAgtaagtttaatttgctcaattttccttctccagcattggttgggattgctccgtttcctagtttgatttttttcacacaactttcactgattttttccttaatatttttttaattttctcag--------------
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GTTGAAATGCATGTTAAACGGGGCAGTTGATTTTCTTATAAAACCCATTCGCAAGAATGAGCTTAGGAACTTGTGGCAACATGTATGGAGAAGGCACACTgtatgtcatattc-cccagtcttttataaagagataattttgtattttttccttcttttagcttggcttgctattt-tagcatatatttacttattcctttttttctttcctctctgctgtatattatttattcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713481|gb|FC063106.1|FC063106EST: GGAAGAATGAGCTGAGGAACCTATGGCAGCATGTTTGGAGAAGGCATGCA CCAACTAGTGGGCATGTGTCTCAAAATTTAAGCATTGCACAGAACAAAGTT
genomic: GGAAGAATGAGCTGAGGAACCTATGGCAGCATGTTTGGAGAAGGCATGCAgtaagtttaa ... attttctcagCCAACTAGTGGGCATGTGTCTCAAAATTTAAGCATTGCACAGAACAAAGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTGAAATGCATGTTGAAAGGGGCCGCTGACTTTCTTGTCAAGCCTGTTAGGAAGAATGAGCTGAGGAACCTATGGCAGCATGTTTGGAGAAGGCATGCAgtaagtttaatttgctcaattttccttctccagcattggttgggattgctccgtttcctagtttgatttttttcacacaactttcactgattttttccttaatatttttttaattttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA