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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaatttttgctgattaaatgtttctttaacaatcttctgattctttttgtgtctttctaaacattgtgtttgttgcag

Basic information

species Vitis vinifera
transcript Vv15s0048g01890.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51052191|gb|CO819435.1|CO819435
EST:     TAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|110685319|gb|EE063602.1|EE063602
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|71855306|gb|DT004361.1|DT004361
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|27585704|gb|CB008399.1|CB008399
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|161718258|gb|FC066959.1|FC066959
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|30256397|gb|CB972240.1|CB972240
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|32244996|gb|CD710815.1|CD710815
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|34543960|gb|CF512192.1|CF512192
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|30254158|gb|CB971173.1|CB971173
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGCGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|26260326|gb|CA811389.1|CA811389
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTAG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|22011190|gb|BQ796224.1|BQ796224
EST:     TTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|110701786|gb|EE079758.1|EE079758
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|30255822|gb|CB971954.1|CB971954
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|110413573|gb|EC979363.1|EC979363
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|33408964|gb|CF214591.1|CF214591
EST:     TCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|30326206|gb|CD009468.1|CD009468
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|32267406|gb|CD716369.1|CD716369
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|33408880|gb|CF214507.1|CF214507
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|30253808|gb|CB971093.1|CB971093
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGCGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|30128631|gb|CB913970.1|CB913970
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|30323004|gb|CD006266.1|CD006266
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|18459069|gb|BM437358.1|BM437358
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|32269651|gb|CD718810.1|CD718810
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|161716547|gb|FC066220.1|FC066220
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|28961058|gb|CB340537.1|CB340537
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|18458719|gb|BM436997.1|BM436997
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|71879185|gb|DT028240.1|DT028240
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|37190433|gb|CF609782.1|CF609782
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|26257001|gb|CA808064.1|CA808064
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|156735526|gb|EV239647.1|EV239647
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|34544048|gb|CF512280.1|CF512280
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|110687531|gb|EE065043.1|EE065043
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|161718317|gb|FC067266.1|FC067266
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTT-TTT-GTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|26257202|gb|CA808265.1|CA808265
EST:     CTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|71856241|gb|DT005296.1|DT005296
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|22012360|gb|BQ797394.1|BQ797394
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTTCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|30256179|gb|CB972022.1|CB972022
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|32245233|gb|CD711052.1|CD711052
EST:     TTAGTCCAGCTCCTCAAGGGAGTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|71856891|gb|DT005946.1|DT005946
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|32265320|gb|CD716909.1|CD716909
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|161711302|gb|FC059099.1|FC059099
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|71855655|gb|DT004710.1|DT004710
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|294964069|gb|GW837872.1|GW837872
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|29784482|gb|CB345278.2|CB345278
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|30131945|gb|CB917284.1|CB917284
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|110730254|gb|EE107122.1|EE107122
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATTCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|71859218|gb|DT008273.1|DT008273
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTG
EST: gi|26264426|gb|CA815489.1|CA815489
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|110699462|gb|EE076482.1|EE076482
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|110694713|gb|EE072070.1|EE072070
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|26262332|gb|CA813395.1|CA813395
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCACATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|32272185|gb|CD721344.1|CD721344
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|27583486|gb|CB006181.1|CB006181
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|110697675|gb|EE074871.1|EE074871
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|77583842|gb|DV220955.1|DV220955
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|30129202|gb|CB914541.1|CB914541
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|161720374|gb|FC069835.1|FC069835
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|110404214|gb|EC968923.1|EC968923
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|77586244|gb|DV222221.1|DV222221
EST:     AGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: AGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|110702542|gb|EE081378.1|EE081378
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|28960193|gb|CB340097.1|CB340097
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|110376382|gb|EC941443.1|EC941443
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|30132633|gb|CB917972.1|CB917972
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|161721235|gb|FC070741.1|FC070741
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|110360721|gb|EC924050.1|EC924050
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|110370992|gb|EC934673.1|EC934673
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|30133319|gb|CB918658.1|CB918658
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|26265906|gb|CA816969.1|CA816969
EST:     AGTCCCAGCTCCTCAAGGGACTCCTCTTCCTTCTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: AGT-CCAGCTCCTCAAGGGACTCCTCTTCC-ACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
EST: gi|30321490|gb|CD004752.1|CD004752
EST:     TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAG                         TCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG
genomic: TTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaattttt ... tttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCTCTTCCACTTGTTTTGTTGGGAAAGgtaaatttttgctgattaaatgtttctttaacaatcttctgattctttttgtgtctttctaaacattgtgtttgttgcag

- - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - CTCCTC