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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTATCGGGCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTATGTATGAGACCAAATCAATCCGTGTACCAAGGCCATTTAAGgtgagaagtttgggggtcactagatctattcatcctgatatatctacatagctgacagaaaaatgtaagtggactagttgctactccttgcag

Basic information

species Vitis vinifera
transcript Vv15s0048g01810.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g01810.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G61080.1 (Arabidopsis thaliana), 5'ss of exon 3
GAGTATCGGGCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTATGTATGAGACCAAATCAATCCGTGTACCAAGGCCATTTAAGgtgagaagtttgggggtcactagatctattcatcctg-atatatctacatagctgacagaaaaatgtaa--gtggact---agttgctactccttgcag
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GAGTATTGGACCTGCCATGTTTGAGGGAGAGGCTCTTGGTCTTGAGGCTATGTATGAAACCAGAACAATCCGTGTTCCAAATCCACACAAAgc---aagtttaatctttcttttctttctttggcgtatatacattattatttttgtt-gatctctctaatcatagattcttgtttaaaagtgttaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351033360|gb|FQ446592.1|FQ446592
EST:     TTGGTGCTATGTATGAAACCAAATCAATCCGTGTACCAAGGCCATTTAAG                         GTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAA
genomic: TTGGTGCTATGTATGAGACCAAATCAATCCGTGTACCAAGGCCATTTAAGgtgagaagtt ... ctccttgcagGTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAA
EST: gi|351044742|gb|FQ448996.1|FQ448996
EST:     TTGGTGCTATGTATGAAACCAAATCAATCCGTGTACCAAGGCCATTTAAG                         GTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAA
genomic: TTGGTGCTATGTATGAGACCAAATCAATCCGTGTACCAAGGCCATTTAAGgtgagaagtt ... ctccttgcagGTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAA
EST: gi|351013105|gb|FQ424810.1|FQ424810
EST:     TTGGTGCTATGTATGAAACCAAATCAATCCGTGTACCAAGGCCATTTAAG                         GTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAA
genomic: TTGGTGCTATGTATGAGACCAAATCAATCCGTGTACCAAGGCCATTTAAGgtgagaagtt ... ctccttgcagGTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAA
EST: gi|110713565|gb|EE089595.1|EE089595
EST:     TTGGTGCTATGTATGAAACCAAATCAATCCGTGTACCAAGGCCATTTAAG                         GTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAA
genomic: TTGGTGCTATGTATGAGACCAAATCAATCCGTGTACCAAGGCCATTTAAGgtgagaagtt ... ctccttgcagGTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAA
EST: gi|71881177|gb|DT030232.1|DT030232
EST:     ACCAAGGCCATTTAAG                         GTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAA
genomic: ACCAAGGCCATTTAAGgtgagaagtt ... ctccttgcagGTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAA