Sequence
atgc intronic sequence ATGC exonic sequenceCCACTTCCATTTTGTTCATGAGTGCGTTACTATATTAATGGACTCTGCAATTTTGTTCTTTGGAGTATTGCCTTGGTTTTGGAAGgtaagtgaatgcatttgtggattatgataggcaccccctaccccccaacatacagatgcatacaaaataattgtgcccatttgctttgtgactgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02040.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G47190.1 (Glycine max), 5'ss of exon 3
CCACTTCCATTTTGTTCATGAGTGCGTTACTATATTAATGGACTCTGCAATTTTGTTCTTTGGAGTATTGCCTTGGTTTTGGAAGgtaagtgaatgcatttgtggattatgataggcaccccctaccccccaacatacagatgcatacaaaataattgtgcccatttgctttgtgactgcag
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CCACTTCCATTTTGTTCACGAGTTTGTGACAATAGTGATAGACTCTACAATTTTGTACTTCGGAGTATTGCCCTGGTTTTGGAAGgtgagattttg-gtgtggtatttatgaagtacgaacccttctt-------tgccaat---tgtaaaattgctatttga---tgtctattgattacag
upper sequence: Vv15s0046g02040.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G39150.1 (Glycine max), 5'ss of exon 3
CCACTTCCATTTTGTTCATGAGTGCGTTACTATATTAATGGACTCTGCAATTTTGTTCTTTGGAGTATTGCCTTGGTTTTGGAAGgtaagtgaatgcatttgtggattatgataggcaccccctaccccccaacatacagatgcatacaaaataattgtgcccatttgctttgtgactgcag
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CCACTTCCATTTTGTTCACGAGTTTGTGACAATAGTGACAGACTCTACAATTTTGTACTTTGGGGTATTGCCCTGGTTTTGGAAGgtgagattttg-gtgtggtatttatgatgtacaaacccttctt-------tgccaat---tgtaaaattgctatttga---tgtctattgattacag
upper sequence: Vv15s0046g02040.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G01320.1 (Arabidopsis thaliana), 5'ss of exon 3
CCACTTCCATTTTGTTCATGAGTGCGTTACTATATTAATGGACTCTGCAATTTTGTTCTTTGGAGTATTGCCTTGGTTTTGGAAGgtaagtgaatgcatttgtggattatgataggcaccccctaccccccaacatacagatgcatacaaaataattgtgcccatttgctttgtgactgcag
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CTATTTTCACTTTGTTCATGAGTTTGTAACTATACTTATGGACTCTGCAATTTTGTTCTTTGGGATCTTGCCTTGGTTTTGGAAGgta--------catatctggttt-cggtatacagtatctcattttgaatatagagttgt-tacattacaattgtaaa-gttttcatttttaccttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110700064|gb|EE077676.1|EE077676EST: TAATGGACTCTGCAATTTTGTTCTTTGGAGTATTGCCTTGGTTTTGGAAG AAATCAGGAGACTTTCTAGTGGTAGTTGGCTTAAATGCAGAGAATGAGATA
genomic: TAATGGACTCTGCAATTTTGTTCTTTGGAGTATTGCCTTGGTTTTGGAAGgtaagtgaat ... gtgactgcagAAATCAGGAGACTTTCTAGTGGTAGTTGGCTTAAATGCAGAGAATGAGATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCACTTCCATTTTGTTCATGAGTGCGTTACTATATTAATGGACTCTGCAATTTTGTTCTTTGGAGTATTGCCTTGGTTTTGGAAGgtaagtgaatgcatttgtggattatgataggcaccccctaccccccaacatacagatgcatacaaaataattgtgcccatttgctttgtgactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG