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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATGGTAATTTGGACCAGTGGCTTCATGGGGATGTAGGGGAAGTCAGCCCTCTGACATGGGATATTCGGATTAACATTATATTAGGAACAGCCAAAGGgtacctaccctagtctgatatactgaaaactatccaacttttgcccgaaaacattgcttggcaggttgttctaatgtgctttgctatttttgttgctgtag

Basic information

species Vitis vinifera
transcript Vv15s0046g02030.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G317938_T01 (Zea mays), 5'ss of exon 3
ACAATGGTAATTTGGACCAGTGGCTTCATGGGGATGTAGGGGAAGTCAGCCCTCTGACATGGGATATTCGGATTAACATTATATTAGGAACAGCCAAAGGgtacctaccctagtctgatatactgaaaactatccaacttttgcccgaaaacattgcttggcaggttgttctaatgtgctttgctatttttgttgctgtag-------
||||||||||| | ||||||||||||||||| ||||| || ||||| ||||| ||||||||||| ||  |||| ||||||||  | |  ||||| ||||||||  |    |  |     | | |||    |  |  | ||| ||  | || ||||      |  |  | |    |||| || |  ||||| |  |  || |       
ACAATGGTAATCTTGACCAGTGGCTTCATGGTGATGTTGGCGAAGTGAGCCCACTGACATGGGACATCAGGATGAACATTATGCTTGCCACAGCTAAAGGgtaatttgttttattcctcagattga----ttccttagtttagcttgtaa-cattatccttcgtggcgatgct-tgtgtttag--attttagaagaagtcgtcaggcg

upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G014366_T03 (Zea mays), 5'ss of exon 3
ACAATGGTAATTTGGACCAGTGGCTTCATGGGGATGTAGGGGAAGTCAGCCCTCTGACATGGGATATTCGGATTAACATTATATTAGGAACAGCCAAAGGgtacctaccctagtctgatatactgaaaactatccaacttttgcccgaaaacattgcttggcaggttgttcta-atgtgctttgctatttttgttgctgtag--------
||||||||||| | ||||||||||||||||| ||||| || ||||| ||||| || ||||||||  |  |||| ||||||||  | ||||| |||||||||||  ||  ||| ||       || |||  |||||   ||| |   |  | |  |  |   | || |  | || |||   || |||   |    |  |||||        
ACAATGGTAATCTTGACCAGTGGCTTCATGGTGATGTTGGAGAAGTAAGCCCACTAACATGGGACGTCAGGATGAACATTATGCTTGGAACCGCCAAAGGgtaattattctattc-------ctcaaatttatcc---tttagtttgggatctgttttattctggctaatgtatatgaaattagctgcctacaattttgtaggccataac

upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G47170.1 (Glycine max), 5'ss of exon 3
ACAATGGTAATTTGGACCAGTGGCTTCATGGGGATGTAGGGGAAGTCAGCCCTCTGACATGGGATATTCGGATTAACATTATATTAGGAACAGCCAAAGGgtacc-taccctagtctgatatactgaaaactatccaacttttgcccgaaaacattgcttggcaggttgttctaatgtgctttgctatttttgttgctgtag
 |||||| ||| | || || ||||| ||||||||||| || |  || |||||| |||||||| | || ||||| ||||||||||| |||||||| | |||||||| ||     |  | || | |   | ||  |  ||  | ||       |   ||||||   | ||     | ||| ||||  | ||| | ||     | 
-CAATGGCAATCTAGAACAATGGCTGCATGGGGATGTTGGAGCTGTAAGCCCTTTGACATGGAACATACGGATGAACATTATATTGGGAACAGCAAGAGGGtaccgtatttgtgattaatcttc---atacagtggaatctatg-------atgatgcttgattgttttgatcactgtacttt-ttgtttgtcttttcaga-