1 5' 3' | 2 5' 3' | 3 5' 3' |
GGAGAACCCAAAAACAATCACAAAATGCAACCATCATTTTCATCTTTCGTGCATTCTTGAGTGGATGGAAAGAAGTGAAACCTGCCCTGTGTGTGATCAGgtttgcctctcagtaatttatcatgcagtgcttagataagaatttcatccatatacttaactagatgatgactggggctcttgatctgctctatgagtat...
species | Vitis vinifera |
transcript | Vv15s0046g01820.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCATTCTTGAGTGGATGGAAAGAAGTGAAACCTGCCCTGTGTGTGATCAG GAAATGATACTTGAAGATACCATGATTATGTGGCTCGGTCGTACCGTTTCAEST: gi|110421201|gb|EC987492.1|EC987492
genomic: GCATTCTTGAGTGGATGGAAAGAAGTGAAACCTGCCCTGTGTGTGATCAGgtttgcctct ... aatgttgcagGAAATGATACTTGAAGATACCATGATTATGTAGCTCGGTCGTACCGTTTCA
EST: GCATTCTTGAGTGGATGGAAAGAAGTGAAACCTGCCCTGTGTGTGATCAG GAAATGATACTTGAAGATACCATGATTATGTAGCTCGGTCGTACCGTTTCAEST: gi|22012037|gb|BQ797071.1|BQ797071
genomic: GCATTCTTGAGTGGATGGAAAGAAGTGAAACCTGCCCTGTGTGTGATCAGgtttgcctct ... aatgttgcagGAAATGATACTTGAAGATACCATGATTATGTAGCTCGGTCGTACCGTTTCA
EST: GCATTCTTGAGTGGATGGAAAGAAGTGAAACCTGCCCTGTGTGTGATCAG GAAATGATACTTGAAGATACCATGATTATGTAGCTCGGTCGTACCGTTTCAEST: gi|22007870|gb|BQ792904.1|BQ792904
genomic: GCATTCTTGAGTGGATGGAAAGAAGTGAAACCTGCCCTGTGTGTGATCAGgtttgcctct ... aatgttgcagGAAATGATACTTGAAGATACCATGATTATGTAGCTCGGTCGTACCGTTTCA
EST: GCATTCTTGAGCGGATGGAAAGAAGTGAAACCTGCCCTGTGTGTGGTCAG GAAATGATACTTGAAGATACCATGATTATGTAGCTCGGTCGTACCGTTTCAEST: gi|33408449|gb|CF214076.1|CF214076
genomic: GCATTCTTGAGTGGATGGAAAGAAGTGAAACCTGCCCTGTGTGTGATCAGgtttgcctct ... aatgttgcagGAAATGATACTTGAAGATACCATGATTATGTAGCTCGGTCGTACCGTTTCA
EST: GCATTCTTGAGTGGATGGAAAGAAGTGAAACCTGCCCTGTGTGTGATCAG GAAATGATACTTGAAGATACCATGATTATGTGGCTCGGTCGTACCGTTTCA
genomic: GCATTCTTGAGTGGATGGAAAGAAGTGAAACCTGCCCTGTGTGTGATCAGgtttgcctct ... aatgttgcagGAAATGATACTTGAAGATACCATGATTATGTAGCTCGGTCGTACCGTTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGAACCCAAAAACAATCACAAAATGCAACCATCATTTTCATCTTTCGTGCATTCTTGAGTGGATGGAAAGAAGTGAAACCTGCCCTGTGTGTGATCAGgtttgcctctcagtaatttatcatgcagtgcttagataagaatttcatccatatacttaactagatgatgactggggctcttgatctgctctatgagtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaga