Sequence
atgc intronic sequence ATGC exonic sequenceCCACCAGAACAACACAGCAGAGGCTCCTGTGGCAGACTCAGGTTCAATATGCATTTCAAGCAATGATAGCAGGAAAGTTTCGCGTGAAGATATTGAACTTgtaagacattatttgctttctactaatggatttttttttttttttttgtgttgatctccaaaagggagctcaacaaatctgtttcttatgtcgggcttaataatttttgcaaaaactttcctccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g00990.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os05g12170.2 (Oryza sativa), 5'ss of exon 3
CCACCAGAACAACACAGCA--GAGGCTCCTGTGGCAGACTCAGGTTCAATATGCATTTCAAGCAATGATAGCAGGAAAGTTTCGCGTGAAGATATTGAACTTgtaagacattatttgctttctactaatggatttttttttttttttttgtgttgatctccaaaagggagctcaacaaatctgtttcttatgtcgggcttaataatttttgcaaaaactttcctccag
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--GGGTGAACAGCCAAATACTGATGCACCTTTAGGGGATTCTGATTCCTTATCCGCTGCAAGTAATGATAATAAAAGGGTTTCTCGTGAAGATATTGAACTTgtaagatggctagtcttttctatta-tggaggcaatgttgaaaagt-gtataatttttgtatacaaagtataataccttccattattaact--aaccaaatattttgcgctgttgtag--------
upper sequence: Vv15s0046g00990.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G61700.1 (Arabidopsis thaliana), 5'ss of exon 3
-CCACCAGAACAACACAGCAGAGGCTCCTGTGGCAGACTCAGGTTCAATATGCATTTCAAGCAATGATAGCAGGAAAGTTTCGCGTGAAGATATTGAACTTgtaagacatta--tttgctttctactaatggattttttttttttt--------ttttgtgttgatctccaaaagggagctcaacaaatctgtttcttatgtcgggctta-ataatttttg----caaaaactttcctccag-----
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GAAAACCAACCTAT-CAATAGATGCTCCTATACAAGATTCTGGTTCTGTATCTGCTTCAAGCAATGACAGTAGGAAAGTTTCACGACAAGATATTGAACTTgtaagaaacaaatttgagctccttcttgtcatttttaactattaaaaagtaggtttcatcgctctctccctatctaagtgtaaatatgttgtgtcctccctcgtatatgtgtaacatgtgatgataaacacttttgaatgatgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110703971|gb|EE081373.1|EE081373EST: AGATATTGAACTT GTCCAGAATTTGATAGAACGGTGCCTACAGTTGTACATGAACAGGGATGAA
genomic: AGATATTGAACTTgtaagacatt ... tttcctccagGTCCAGAATTTGATAGAACGGTGCCTACAGTTGTACATGAACAGGGATGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCACCAGAACAACACAGCAGAGGCTCCTGTGGCAGACTCAGGTTCAATATGCATTTCAAGCAATGATAGCAGGAAAGTTTCGCGTGAAGATATTGAACTTgtaagacattatttgctttctactaatggatttttttttttttttttgtgttgatctccaaaagggagctcaacaaatctgtttcttatgtcgggcttaataatttttgcaaaaactttcctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA