Sequence
atgc intronic sequence ATGC exonic sequenceATCTGGCAGAGATAGCTAAGTTTCTGGGTATTACCACCACTGTAGATACAGAAGCGATCCAAgtgagttgttcaattccttatatgtgcagtattatcttaactaatggttgttgcaacatactgtgagaacatcaaatatacagtttccactgtacattct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0024g01470.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G07390.1 (Glycine max), 5'ss of exon 4
ATCTGGCAGAGATAGCTAAGTTTCTGGGTATTACCACCACTGTAGATACAGAAGCGATCCAAgtgagttgttcaattccttatatgtgcagtattatcttaactaatgg-----ttgttgcaacatactgtgagaacatcaaatatacagtttccactgtacattct
|| |||||||||| |||||||||||||||||||| || |||||||||||||| || || || || ||| ||||| || | | | | ||| | ||| || |||| | || || | | | | | | ||| | | |
ATTTGGCAGAGATTGCTAAGTTTCTGGGTATTACAACAACTGTAGATACAGATGCCATTCAGgttagtca--caattgattgtgtct-tgctcttactgtggataacaatgtacttattgctcttttctttgctattctgatctcagctatatcc-ttctgtgtca-
upper sequence: Vv15s0024g01470.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G07310.1 (Glycine max), 5'ss of exon 3
ATCTGGCAGAGATAGCTAAGTTTCTGGGTATTACCACCACTGTAGATACAGAAGCGATCCAAgtgagttgttcaattccttatatgtgcagtattatcttaactaatgg-----ttgttgcaacatactgtgagaacatcaaatatacagtttccactgtacattct
|| |||| ||||| |||||||||||||||||||| || |||||||||||||| || || || || ||| ||||| || | | | | ||| | ||| || |||| | || || | | | | | | ||| | | |
ATTTGGCTGAGATTGCTAAGTTTCTGGGTATTACAACAACTGTAGATACAGATGCCATTCAGgttagtca--caattgattgtgtct-tgctcttactgtggataacaatgtacttattgctcttttctttgctattctgatctcagctatatcc-ttctgtgtca-
upper sequence: Vv15s0024g01470.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G29280.1 (Glycine max), 5'ss of exon 4
ATCTGGCAGAGATAGCTAAGTTTCTGGGTATTACCACCACTGTAGATACAGAAGCGATCCAAgtgagttgttcaattccttatatgtgcagtattatcttaactaatggttgttgca-acatactgtgagaacatcaaatatacagtttccactgtacattct------
|| | |||||||| ||||||||| |||||||||| || || ||||||||||| || ||||| || ||| ||||| || | | | | ||| | ||| | ||| | | || | | | | | | || || ||||
ATTTAGCAGAGATTGCTAAGTTTTTGGGTATTACAACAACCGTAGATACAGATGCCATCCAGgttagtca--caattgattgtgtct-tgctcttactgtggataacaat----gcacatgtgctcttttctttgctattctgatctctcagctagctattcccttctgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110373786|gb|EC938134.1|EC938134EST: TAGCTAAGTTTCTGGGTATTACCACCACTGTAGATACAGAAGCGATCCAA GGACGAGGAACCTATGAAGATCGCACAGAAATGCTCCGTCTTATTGTTGAT
genomic: TAGCTAAGTTTCTGGGTATTACCACCACTGTAGATACAGAAGCGATCCAAgtgagttgtt ... ttggttgcagGGACGAGGAACCTATGAAGATCGCACAGAAATGCTCCGTCTTATTGTTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCTGGCAGAGATAGCTAAGTTTCTGGGTATTACCACCACTGTAGATACAGAAGCGATCCAAgtgagttgttcaattccttatatgtgcagtattatcttaactaatggttgttgcaacatactgtgagaacatcaaatatacagtttccactgtacattct
- - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaca