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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCGCCGCCGAAAGTCGCAGCAACCCATTCAAGATAACCACAAGCTGCACCAGCACCACCTCGAAAATGCCCGGAATTCATCTTCCGACAACATCACTAgtacgtggtagccgtgaatctctttctgtgtgtctcacaggtgttttttttttatcaaaacaaagcgtgaaaaatgatttgcattttttttttctgggttgtag

Basic information

species Vitis vinifera
transcript Vv15s0021g02300.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71871136|gb|DT020191.1|DT020191
EST:     CCAGCACCACCTCGAAAATGCCCGGAATTCATCTTCCGACAACATCACTA                         GGTCGCCGCCAGATTCCGGAGCTCACTCGTCGTCGTCGGTGACGGTGGCGG
genomic: CCAGCACCACCTCGAAAATGCCCGGAATTCATCTTCCGACAACATCACTAgtacgtggta ... tgggttgtagGGTCGCCGCCAGATTCCGGAGCTCACTCGTCGTCGTCGGTGACGGTGGCGG
EST: gi|71872919|gb|DT021974.1|DT021974
EST:     CCAGCACCACCTCGAAAATGCCCGGAATTCATCTTCCGACAACATCACTA                         GGTCGCCGCCAGATTCCGGAGCTCACTCGTCGTCGTCGGTGACGGTGGCGG
genomic: CCAGCACCACCTCGAAAATGCCCGGAATTCATCTTCCGACAACATCACTAgtacgtggta ... tgggttgtagGGTCGCCGCCAGATTCCGGAGCTCACTCGTCGTCGTCGGTGACGGTGGCGG
EST: gi|110419768|gb|EC986017.1|EC986017
EST:     CCAGCACCACCTCGAAAATGCCCGGAATTCATCTTCCGACAACATCACTA                         GGTCGCCGCCAGATTCCGGAGCTCACTCGTCGTCGTCGGTGACGGTGGCGG
genomic: CCAGCACCACCTCGAAAATGCCCGGAATTCATCTTCCGACAACATCACTAgtacgtggta ... tgggttgtagGGTCGCCGCCAGATTCCGGAGCTCACTCGTCGTCGTCGGTGACGGTGGCGG