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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAACTGTCTACATTTTCTCTCTTCTGGGTGCCTTTCTTAGCGACTCTTACTGGGGGAGGTACAAGACCTGTGCCATCTTTCAGGTCATCTTTGTCATTgtaagtttctaagtataaagaccatcaaggaaaatgtatcgaggattgatttatatagtctgtcttcctagttctaacaaagtatgttggattgcag

Basic information

species Vitis vinifera
transcript Vv15s0021g00330.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g00330.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os02g46460.1 (Oryza sativa), 5'ss of exon 3
TGGAACTGTCTACATTTTCTCTCTTCTGGGTGCCTTTCTTAGCGACTCTTACTGGGGGAGGTACAAGACCTGTGCCATCTTTCAGGTCATCTTTGTCATTgtaagtttctaagtataaagaccatcaaggaaaatgtatcgaggattgatttatatagtctgt---cttcctagttctaacaaagtatgttggattgcag-----
 || || || ||||| ||||| ||  | || ||||| || |||||||| ||||||||  | ||||||||||| ||||| || |||| |||||||||| |||||||   |  |  | |  |  ||||        |    ||  | |  || |  | |    |     |||   || | | | |   || |    || |       
CGGCACGGTTTACATGTTCTCCCTCATCGGCGCCTTCCTCAGCGACTCCTACTGGGGCCGCTACAAGACCTGCGCCATATTCCAGGCCATCTTTGTCCTTgtaagcacc--accacacggcacatccctctctct---ccgcagttctatctgaaaaccacgcgcctttctcggtgcgatcgattgatctcatgtttctagctac

upper sequence: Vv15s0021g00330.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G044851_T01 (Zea mays), 5'ss of exon 3
TGGAACTGTCTACATTTTCTCTCTTCTGGGTGCCTTTCTTAGCGACTCTTACTGGGGGAGGTACAAGACCTGTGCCATCTTTCAGGTCATCTTTGTCATTgtaagtttctaagtataaagaccatcaaggaaaatgtatcgaggattgatttatatagtctgtcttcctagttct-aacaaagtatgttggattgcag------
 || || || ||||| ||||| ||  | || ||||| || |||||||| ||||||||  | ||||||||||| |||||||| |||| |||||||||| | ||||||  |     |     |||  |     ||  |    |  ||||  |  ||    |||| |   |||    | | ||  || ||| |||  |         
GGGCACCGTGTACATGTTCTCCCTCATCGGCGCCTTCCTCAGCGACTCCTACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgc---acacgtctacctacctattaatcgacctgccgatttttccat-cgatctgccaatctaccgatcagcagcgtgtgtcggaaagagttttcac