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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCCTCAGTTAAGAGCTGTTGTTTTGCATAGTCCTATACTTTCAGGTTTAAGAGTTATGTATCCTGTAAAGCGAACATACTGGTTTGACATTTATAAGgtatcttcttcaaaatatctagcattactttatatatatatatatatatatattaattgaaaaataattgcatttattttttatggaattgagtgctggtttctgttgattgtgtgcag

Basic information

species Vitis vinifera
transcript Vv14s0219g00290.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0219g00290.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os12g18860.1 (Oryza sativa), 5'ss of exon 3
GCTGCCTCAGTTAAGAGCTGTTGTTTTGCATAGTCCTATACTTTCAGGTTTAAGAGTTATGTATCCTGTAAAGCGAACATACTGGTTTGACATTTATAAGgtatcttcttcaaaatatctagcattactttatatatatatatatatatatattaattgaaaaataattgcatttattttttatggaattgagtgctggtttctgttgattg-tgtgcag
  ||| || | |  |||||||||| ||||| ||||||||||| ||||| || ||||||||||||||||| ||||| ||||||||||||||||| |||||||| | ||         |||     ||| |  || |  || ||  |  || ||||| ||     ||  |  | |||  | | |    | |  | |     |   | |  ||||   | |||
ATTGCATCGGCTTCGAGCTGTTGTCTTGCACAGTCCTATACTGTCAGGATTGAGAGTTATGTATCCTGTGAAGCGTACATACTGGTTTGACATATATAAGgtttgtt---------atccttttttattccatgttgatttagcttgatctattatttcttgcatgctgcccttttctatattaacactcaactttccctcggtatccattgacttccag

upper sequence: Vv14s0219g00290.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G039214_T01 (Zea mays), 5'ss of exon 3
GCTGCCTCAGTTAAGAGCTGTTGTTTTGCATAGTCCTATACTTTCAGGTTTAAGAGTTATGTATCCTGTAAAGCGAACATACTGGTTTGACATTTATAAGgtatcttcttcaaaatatctagcattactttatatatatatatatatatatattaattgaaaaataattgcatttattttttatggaattgagtgctggtttctgttgattgtgtgcag
  |  ||||| |  ||||||||||  |||||||||||||| | |||||  | ||||||||||||||||| ||||| ||||| ||||||||||| || ||||| | |  |      |   | ||   | |  ||||  |  |||     | |||   |    |  |   || |||| || ||  |         |||   ||| |               
TTTATCTCAGCTGCGAGCTGTTGTCCTGCATAGTCCTATATTGTCAGGGCTGAGAGTTATGTATCCTGTGAAGCGCACATATTGGTTTGACATCTACAAGgtttgtcgtcatctgttaattgcggcattcaatattgagttatccgcttctatatctc---aggtgcctg-attttttgttattcaggcgacatgcaattttgt---------------

upper sequence: Vv14s0219g00290.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G07280.1 (Glycine max), 5'ss of exon 3
GCTGCCTCAGTTAAGAGCTGTTGTTTTGCATAGTCCTATACTTTCAGGTTTAAGAGTTATGTATCCTGTAAAGCGAACATACTGGTTTGACATTTATAAGgtatcttcttcaaaatatctagcattactttatatatatatatatatatatattaattgaaaaata-attgcatttattttttatggaattgagtgctggtttctgttgattgtgtgcag
| ||||||| ||||||||||||||| |||| ||||| |||||||| || ||||| || |||||||| |||||||| ||||||||||||||||| |||||||||   |       ||||   |  ||  ||| |    |||||| |  || | |||||  || || |   ||| ||   ||  |||| |                                
GTTGCCTCAATTAAGAGCTGTTGTTCTGCACAGTCCCATACTTTCTGGCTTAAGGGTCATGTATCCAGTAAAGCGTACATACTGGTTTGACATATATAAGgtagtat-------atatgctgtttttatttctcatcatatatgtgaatttcttaatctaataagatgctgctttgtgttgatatgcag-------------------------------

upper sequence: Vv14s0219g00290.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G07360.1 (Glycine max), 5'ss of exon 3
GCTGCCTCAGTTAAGAGCTGTTGTTTTGCATAGTCCTATACTTTCAGGTTTAAGAGTTATGTATCCTGTAAAGCGAACATACTGGTTTGACATTTATAAGgtatcttcttcaaaatatctagcattactttatatatatatatatatatatattaattgaaaaataattgcatttattttttatgg-aattgagtgctggtttctgttgattgtgtgcag
  ||||||| || |||||||||||| |||| ||||| ||||||||||| ||||| || |||||||| ||||| || |  |||||||||||||| ||||||||             ||  |   | |   || |  | || | ||   | ||| | || |    | |    |||  |||  ||||   |||    ||||| ||| |||||||   ||||||
ATTGCCTCAATTGAGAGCTGTTGTTCTGCACAGTCCCATACTTTCAGGCTTAAGGGTCATGTATCCAGTAAAACGTAGTTACTGGTTTGACATATATAAGgttagcctaatgttttaatttctaatcacttgttgacatttctaatcaaatactgat-ggcttacaggcacatgaattccttattctaatcagctgctgctttgtgttgat---gtgcag

upper sequence: Vv14s0219g00290.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G24080.1 (Glycine max), 5'ss of exon 3
GCTGCCTCAGTTAAGAGCTGTTGTTTTGCATAGTCCTATACTTTCAGGTTTAAGAGTTATGTATCCTGTAAAGCGAACATACTGGTTTGACATTTATAAGgt--atct--tcttcaaaatatctagcattactttatatatatatatatatatatattaattgaaaaataattgcatttattttttatggaattgagtgctggtttctgttgattgtgtgcag
  | ||||| || |||||||||||| | || ||||| ||||||||||| ||||| || |||||||| ||||| || |  |||||||||||||| ||||||||    ||  | ||     |    | || || || | || | ||   | |||  |  | ||| | |   |  || |||     || ||  |||    | ||| ||| |||||||   ||||||
ATTACCTCAATTGAGAGCTGTTGTTCTTCACAGTCCCATACTTTCAGGCTTAAGGGTCATGTATCCAGTAAAACGTAGTTACTGGTTTGACATATATAAGgttagcctaatgttttggtttctaatcactagttgacatttctaatcaaatac-tgatgatttacaggcacatgaattc---cttaatctaatcagatactgctttgtgttgat---gtgcag

upper sequence: Vv14s0219g00290.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G14390.1 (Arabidopsis thaliana), 5'ss of exon 3
GCTGCCTCAGTTAAGAGCTGTTGTTTTGCATAGTCCTATACTTTCAGGTTTAAGAGTTATGTATCCTGTAAAGCGAACATACTGGTTTGACATTTATAAGgtatcttcttcaaaatatctagc---attactttatatatatatatatatatatattaattgaaaaataattgcatttattttttatggaattgagtgctggtttctgttgattgtgtgcag
| ||||||| |||||||||| |||| | ||||| || || ||||| ||| ||||||| |||||||| || |||   ||||||||||| ||||| |  |||||||    | ||  ||   |||    || | |||  || |   |   |   | |||   ||      | |  |  |  | |||| |    |||    |                        
GTTGCCTCAATTAAGAGCTGCTGTTCTCCATAGCCCGATTCTTTCTGGTCTAAGAGTAATGTATCCAGTGAAGAAGACATACTGGTTCGACATCTTCAAGgtattaaatacatcattcttagatggatcattttcgattttcttgctttcctctatctttt------tcacagtgtccacttttaacaatatttgcag------------------------