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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAATGTTAAATACCTTCCTGGTATAAAGCTTGGCAAAAATGTTGTTGCGGACCCAGACCTTGAACACGCAGgtaacaaaattcgaagatcttctgagaattttgacttggattatgagtcatttgtttattgtgtggtggatatgcgtttgctttggcttgtggttctgattggcgaaaaattgtgcag

Basic information

species Vitis vinifera
transcript Vv14s0219g00280.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0219g00280.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G24070.1 (Glycine max), 5'ss of exon 4
GAAAATGTTAAATACCTTCCTGGTATAAAGCTTGGCAAAAATGTTGTTGCGGACCCAGACCTTGAACACGCAGgtaacaaaattcga---------agatcttctgagaattttga--cttggattatgagtcatttgtttattgtgtggtggatatgcgtttgctttggcttgtggttctgattggcgaaaaattgtgcag-------------------------------------
|||||||| ||||| |||||||| || ||||||||||||||||||||||| || ||||||||||||   |||||||    | || |          |  | ||||| || || | |   |   | ||  | |||    || |             |    |||            || |   |    | | || |  |  |                                      
GAAAATGTCAAATATCTTCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCAGATCCAGACCTTGAAAGTGCAGgtatttgatttagttttttatttatttattctgtgatttataaggttaaaaataaaattcacaaattcacaccaaaagaaccaaatttttaaacaaagaaaaggatgcaaaactctacaagtgttaaaaacatgttcactgtttacttttggggtacattatgcag

upper sequence: Vv14s0219g00280.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G07410.1 (Glycine max), 5'ss of exon 3
GAAAATGTTAAATACCTTCCTGGTATAAAGCTTGGCAAAAATGTTGTTGCGGACCCAGACCTTGAACACGCAGgtaacaaaattcgaagatcttctgagaattttgacttggattatgagtcatttgtttattgtgtggtggatatgcgtttgctttggcttgtggttctgattggcgaaaaattgtgcag----------------------------------------------------
|||||||| ||||| || ||||| || ||||||||||||||||||||||| || ||||||||||||   || ||||   || || |      || |     | || |||| ||||  ||   |  |    | |         | || | |       |        || | | |   |||||    ||||                                                     
GAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCAGATCCAGACCTTGAAAGTGCCGgtatttaatttagttttatttatttacttatttactttgatttaga---aggtaaaaagtaaaattcacaaattcataccaaaagaaccacatttttaaataaagaaaagg-atgcaaaactccacaagtgttaaatgttcactgtttacttttggggtaaattatgcag