1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAATGTTAAGCAAGATCAGGATGGCGTTCATGAAGTGCATTGCTCGAGAGAAAGGAGTAGGGCAGCATGGAAAATTATTGAGGAGgtattggtggatgaaactatcatctgtttttggtcactgccccctgaaatatttggtgtgcctcactgcttggtacataatctggtgatattttgcgcag
species | Vitis vinifera |
transcript | Vv14s0219g00070.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGCATTGCTCGAGAGAAAGGAGTAGGGCAGCATGGAAAATTATTGAGGAG TATTTGATGCCCTTTGTGGAGAAAGAGGGCTATCAGATCTCAAGTAGCTGTEST: gi|37187653|gb|CF607006.1|CF607006
genomic: TGCATTGCTCGAGAGAAAGGAGTAGGGCAGCATGGAAAATTATTGAGGAGgtattggtgg ... ttttgcgcagTATTTGATGCCCTTTGTGGAGAAAGAGGGCTATCAGATCTCAAGTAGCTGT
EST: TGCATTGCTCGAGAGAAAGGAGTAGGGCAGCATGGAAAATTATTGAGGAG TATTTGATGCCCTTTGTGGAGAAAGAGGGCTATCAGATCTCAAGTAGCTGTEST: gi|294964372|gb|GW838175.1|GW838175
genomic: TGCATTGCTCGAGAGAAAGGAGTAGGGCAGCATGGAAAATTATTGAGGAGgtattggtgg ... ttttgcgcagTATTTGATGCCCTTTGTGGAGAAAGAGGGCTATCAGATCTCAAGTAGCTGT
EST: TGCATTGCTCGAGAGAAAGGAGTAGGGCAGCATGGAAAATTATTGAGGAG TATTTGATGCCCTTTGTGGAGAAAGAGGGCTATCAGATCTCAAGTAGCTGT
genomic: TGCATTGCTCGAGAGAAAGGAGTAGGGCAGCATGGAAAATTATTGAGGAGgtattggtgg ... ttttgcgcagTATTTGATGCCCTTTGTGGAGAAAGAGGGCTATCAGATCTCAAGTAGCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGTTAAGCAAGATCAGGATGGCGTTCATGAAGTGCATTGCTCGAGAGAAAGGAGTAGGGCAGCATGGAAAATTATTGAGGAGgtattggtggatgaaactatcatctgtttttggtcactgccccctgaaatatttggtgtgcctcactgcttggtacataatctggtgatattttgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG