1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAAATCGTGAAGATGGGGATATGTGCATCGTGCTTAATGCAAAGGATATCTCTGTCACAGGAAGGAAACTTACTAATAAGTTTTATCGTTGGCATACCGGgtaagcacccttgtgcttggttttagttggttttagtcatgaacagaatgttggacaactacatgaaaataaagggggctatgtttggtttccacagcag...
species | Vitis vinifera |
transcript | Vv14s0171g00250.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCTGTCACAGGAAGGAAACTTACTAATAAGTTTTATCGTTGGCATACCGG GTATATAGGTCACTTGAAAGAAAGGAGTTTAAAGGATCAGTTAGCAAAGGAEST: gi|110698261|gb|EE075596.1|EE075596
genomic: TCTGTCACAGGAAGGAAACTTACTAATAAGTTTTATCGTTGGCATACCGGgtaagcaccc ... tgatgtacagGTATATAGGTCACTTGAAAGAAAGGAGTTTAAAGGATCAGTTAGCAAAGGA
EST: TCTGTCACAGGAAGGAAACTTACTAATAAGTTTTATCATTGGCATACCGG GTATATAGGTCACTTGAAAGAAAGGAGTTTAAAGGATCAGTTAGCAAAGGAEST: gi|77585738|gb|DV221960.1|DV221960
genomic: TCTGTCACAGGAAGGAAACTTACTAATAAGTTTTATCGTTGGCATACCGGgtaagcaccc ... tgatgtacagGTATATAGGTCACTTGAAAGAAAGGAGTTTAAAGGATCAGTTAGCAAAGGA
EST: TCTGTCACAGGAAGGAAACTTACTAATAAGTTTTATCGTTGGCATACCGG GTATATAGGTCACTTGAAAGAAAGGAGTTTAAAGGATCAGTTAGCAAAGGAEST: gi|71870914|gb|DT019969.1|DT019969
genomic: TCTGTCACAGGAAGGAAACTTACTAATAAGTTTTATCGTTGGCATACCGGgtaagcaccc ... tgatgtacagGTATATAGGTCACTTGAAAGAAAGGAGTTTAAAGGATCAGTTAGCAAAGGA
EST: TCTGTCACAGGAAGGAAACTTACTAATAAGTTTTATCGTTGGCATACCGG GTATATAGGTCACTTGAAAGAAAGGAGTTTAAAGGATCAGTTAGCAAAGGAEST: gi|110382064|gb|EC938387.1|EC938387
genomic: TCTGTCACAGGAAGGAAACTTACTAATAAGTTTTATCGTTGGCATACCGGgtaagcaccc ... tgatgtacagGTATATAGGTCACTTGAAAGAAAGGAGTTTAAAGGATCAGTTAGCAAAGGA
EST: TCTGTCACAGGAAGGAAACTTACTAATAAGTTTTATCGTTGGCATACCGG GTATATAGGTCACTTGAAAGAAAGGAGTTTAAAGGATCAGTTAGCAAAGGAEST: gi|26257383|gb|CA808446.1|CA808446
genomic: TCTGTCACAGGAAGGAAACTTACTAATAAGTTTTATCGTTGGCATACCGGgtaagcaccc ... tgatgtacagGTATATAGGTCACTTGAAAGAAAGGAGTTTAAAGGATCAGTTAGCAAAGGA
EST: TCTGTCACAGGAAGGAAACTTACTAATAAGTTTTATCGTTGGCATGCCGG GTATATAGGTCACTTGAAAGAAAGGAGTTTAAAGGATCAGTTAGCAAAGGAEST: gi|349826908|gb|FQ418999.1|FQ418999
genomic: TCTGTCACAGGAAGGAAACTTACTAATAAGTTTTATCGTTGGCATACCGGgtaagcaccc ... tgatgtacagGTATATAGGTCACTTGAAAGAAAGGAGTTTAAAGGATCAGTTAGCAAAGGA
EST: TCTGTCACAGGAAGGAAACTTACTAATAAGTTTTATCGTTGGCATACCGG GTATATAGGTCACTTGAAAGAAAGGAGTTTAAAGGATCAGTTAGCAAAGGA
genomic: TCTGTCACAGGAAGGAAACTTACTAATAAGTTTTATCGTTGGCATACCGGgtaagcaccc ... tgatgtacagGTATATAGGTCACTTGAAAGAAAGGAGTTTAAAGGATCAGTTAGCAAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAATCGTGAAGATGGGGATATGTGCATCGTGCTTAATGCAAAGGATATCTCTGTCACAGGAAGGAAACTTACTAATAAGTTTTATCGTTGGCATACCGGgtaagcacccttgtgcttggttttagttggttttagtcatgaacagaatgttggacaactacatgaaaataaagggggctatgtttggtttccacagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa