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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGAAGCTGAAGTTCAGGAGGCTTTAGCAGCACTGAACTCAAAATTGGAAATAATTGGAAATCTTGTTCATGATTCAGTTCCAGTGAGCAACGATGAGgtatacaaatcgatagattttagttcattttaagctattaattctaatgcaaaatctttgtttactaacttcttttttattttataaattttggtag

Basic information

species Vitis vinifera
transcript Vv14s0128g00370.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71863504|gb|DT012559.1|DT012559
EST:     AAATAATTGGAAATCTTGTTCATGATTCAGTTCCAGTGAGCAACGATGAG                         GCAAATAATGCTGTTATTCGGTCATGGGGTGAGAAAAAAGTGGAGCCAAAA
genomic: AAATAATTGGAAATCTTGTTCATGATTCAGTTCCAGTGAGCAACGATGAGgtatacaaat ... attttggtagGCAAATAATGCTGTTATTCGGTCATGGGGTGAGAAAAAAGTGGAGCCAAAA
EST: gi|71859099|gb|DT008154.1|DT008154
EST:     AAATAATTGGAAATCTTGTTCATGATTCAGTTCCAGTGAGCAACGATGAG                         GCAAATAATGCTGTTATTCGGTCATGGGGTGAGAAAAAAGTGGAGCCAAAA
genomic: AAATAATTGGAAATCTTGTTCATGATTCAGTTCCAGTGAGCAACGATGAGgtatacaaat ... attttggtagGCAAATAATGCTGTTATTCGGTCATGGGGTGAGAAAAAAGTGGAGCCAAAA
EST: gi|71887971|gb|DT037026.1|DT037026
EST:     AAATAATTGGAAATCTTGTTCATGATTCAGTTCCAGTGAGCAACGATGAG                         GCAAATAATGCTGTTATTCGGTCATGGGGTGAGAAAAAAGTGGAGCCAAAA
genomic: AAATAATTGGAAATCTTGTTCATGATTCAGTTCCAGTGAGCAACGATGAGgtatacaaat ... attttggtagGCAAATAATGCTGTTATTCGGTCATGGGGTGAGAAAAAAGTGGAGCCAAAA