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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGCAGGTACAAGAGCCCTGATGAGCATCCTTTCTTCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAGgtatgatataagatgtgtttgaaatatgattactctttttgtccaagttgcagtttgtttggtaactgtttgacctccagggcatggtactcgtaagtta...

Basic information

species Vitis vinifera
transcript Vv14s0108g01330.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0108g01330.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g55870.1 (Oryza sativa), 5'ss of exon 3
GTGGGCAGGTACAAGAGCCCTGATGAGCATCCTTTCTTCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAGgtatgatataagat-gtgttt---gaaatatgattactctttttgtccaagttgcagtttgtttggtaactgtttgacctccagggcatggtactcgtaagtta
|| || || |||||||||||||||||||| || ||||| || |  ||  ||||||||||| ||||||||||| | ||||| |||||||||    ||||  | |||||    || || |  ||  ||| | |   |     ||| |   |||| ||     | | |   ||  |      | |    | |  
GTTGGGAGATACAAGAGCCCTGATGAGCACCCATTCTTTCCGGAGGATCTGCCTGAACCACTGTTGCCACCTCTCCAGTATCCAAAGgtaatgcataaactcgtgttcttagacatctagttcttctctgtaggctttcagcattccttttgttagta--taggcaaacatagtccttcattgactaat--

upper sequence: Vv14s0108g01330.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G03290.1 (Glycine max), 5'ss of exon 3
GTGGGCAGGTACAAGAGCCCTGATGAGCATCCTTTCTTCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAGgtatgatataagatgtgtttgaaatatgattactctttttgtccaagttgcagtttgtttggtaactgt-ttgacctccagggcatggtactcgtaagtta
||||| |||||||||||||||||||||||||| ||||| |||| ||   | |||||||||||||| |||||||| ||||| ||  |||||   ||||     |    | |||   | |  |    ||    |  ||  |||   |    | | | | || |  |  |  | |   |  |   | ||  
GTGGGTAGGTACAAGAGCCCTGATGAGCATCCATTCTTTCCAGATGGCCTACCTGAACCAATGTTACCACCTTTGCAGTATCCTCAGgtaaagtatattccttagcagcaatcaaaattgttcccttaagaattttttagtcgctaaatttattatgttcaatttgacagaactatgttttcaggta-

upper sequence: Vv14s0108g01330.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G05830.1 (Glycine max), 5'ss of exon 3
GTGGGCAGGTACAAGAGCCCTGATGAGCATCCTTTCTTCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAGgtatgatataagatgtgtttgaaatatgattactctttttgtccaagttgcagtttgtttggtaac-tgtttgacctccagggcatggtact-cgtaagtta--
||||| |||||||||||||||||||||||||| ||||| |||| ||   | || |||||| |||| |||||||| ||||||||  |||||    |||     | | |  | | |||     || | | | || ||   || | |  |   ||  ||| | |           |  |||| |  |||||   
GTGGGTAGGTACAAGAGCCCTGATGAGCATCCATTCTTTCCAGATGGCCTACCCGAACCAGTGTTACCACCTTTGCAGTACCCTCAGgtaaatgatattccttatgttcactttgacagaactatgttttcaggt---agatagaataacaatgtgtataattctttaaat-tcctactgcccaagttgat

upper sequence: Vv14s0108g01330.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G29200.1 (Arabidopsis thaliana), 5'ss of exon 3
GTGGGCAGGTACAAGAGCCCTGATGAGCATCCTTTCTTCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAGgtatg----atataagatgtgtttgaaatatgattactctttttgt-ccaagttgcagtttgtttg-gtaactgtttgacctccagggcatggtactcgtaagtta-------------------------------------------------------------------
|| || ||||  ||||| |||||||| |||||||||||||| | |||  | || || || |||||||| ||| | |||||||||||||||      ||| | | |     ||||| | |||      |||| |      |||||  ||       |   |  ||||  | | | | | |  |   ||||  |                                                                    
GTTGGTAGGTTTAAGAGTCCTGATGAACATCCTTTCTTCCCTGATGATCTACCAGAGCCTATGTTGCCTCCTCTTCAGTACCCAAAGgtactcaatatacatgtttcacatgaaaaaagatcgtctcttttatgttttcttgcatcttaccgatatggtttcttgatgttcggtgaa-gcaatgtgtaatcttgtttgagatgtgttttcaacttctgtactttggtgctgaggattcaagtttctttcttattgtatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161714107|gb|FC063819.1|FC063819
EST:     TCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAG                         GTACTGCATCCTGGTTCAGATTTGATCAATATTAATGAGCAAATATGGAGT
genomic: TCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAGgtatgatata ... ttgcaaatagGTACTGCATCCTGGTTCAGATTTGATCAATATTAATGAGCAAATATGGAGT
EST: gi|351041739|gb|FQ455949.1|FQ455949
EST:     TCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAG                         GTACTGCATCCTGGTTTAGATTTGATCAATATTAATGAGCAAATATGGAGT
genomic: TCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAGgtatgatata ... ttgcaaatagGTACTGCATCCTGGTTCAGATTTGATCAATATTAATGAGCAAATATGGAGT
EST: gi|161715858|gb|FC065189.1|FC065189
EST:     TCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAG                         GTACTGCATCCTGGTTCAGATTTGATCAATATTAATGAGCAAATATGGAGT
genomic: TCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAGgtatgatata ... ttgcaaatagGTACTGCATCCTGGTTCAGATTTGATCAATATTAATGAGCAAATATGGAGT
EST: gi|351026402|gb|FQ428414.1|FQ428414
EST:     TCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAG                         GTACTGCATCCTGGTTCGGATTTGATCAATATTAATGAGCAAATATGGAGT
genomic: TCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAGgtatgatata ... ttgcaaatagGTACTGCATCCTGGTTCAGATTTGATCAATATTAATGAGCAAATATGGAGT
EST: gi|351040113|gb|FQ425199.1|FQ425199
EST:     TCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAG                         GTACTGCATCCTGGTTCAGATTTGATCAATATTAATGAGCAAATATGGAGT
genomic: TCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAGgtatgatata ... ttgcaaatagGTACTGCATCCTGGTTCAGATTTGATCAATATTAATGAGCAAATATGGAGT