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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATACAAGAGGTCTAGATTGCCAAGGAACCGTAGGACTGTGAACCGGGCCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatttcaagtttatttcgtttcttaactgcactagttggggttttgattaataactttttcag

Basic information

species Vitis vinifera
transcript Vv14s0108g00850.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0108g00850.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G032564_T01 (Zea mays), 5'ss of exon 3
----------TGAATACAAGAGGTCTAGATTGCCAAGGAACCGTAGGACTGTGAACCGGGCCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGT-ATGATCCTgtaaatgatttcaagtttatttcgtttcttaactgcactagttggggttttgattaa--taactttttcag
          ||| ||||||||||| || ||| |||||||||| ||||||||||||||  | ||||| |||||| |||| |||   || || || ||||||| |  || || |         ||| |      |||   || |    | || | | | |  | | | |  |   | | ||||
TGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattctttcg-------caactcatgcccgtccattgaaatgattaatggtgatactaagtcacctgcatgtctcag

upper sequence: Vv14s0108g00850.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G49340.1 (Glycine max), 5'ss of exon 3
----------TGAATACAAGAGGTCTAGATTGCCAAGGAACCGTAGGACTGTGAACCGGGCCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatttcaagtttatttcgtttcttaactgcactagttggggttttgattaataactttttcag----------
          |||||||||||||||||||||||| |||||||| ||||| || ||||| ||||||||||||||||| || || || ||||| || || ||||||| | ||  |||  ||  | || ||||||    |   || |    ||||||  ||     |||| | || | | |           
TAAGACCTGCTGAATACAAGAGGTCTAGATTGCCTAGGAACCGCAGGACCGTAAACCGAGCCTATGGAGGTGTTTTATCCGGGGGAGCTGTTAGAGAAAGgtatgttgctcaaaa--atcactagattattta---tgcaaattttcttagttgaagtaa-atttaacagctatgtaatcttgctatag

upper sequence: Vv14s0108g00850.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G37360.1 (Glycine max), 5'ss of exon 3
----------TGAATACAAGAGGTCTAGATTGCCAAGGAACCGTAGGACTGTGAACCGGGCCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatttcaagtttatttcgtttcttaactgcactagttggggttt-tgattaataactttttcag-------
          ||||||||||||||||||||||||  ||||||| ||||| || ||||| ||||| ||||||||||| || || || ||||| || || ||||||| | ||  ||| |  || |  | | |||   ||   || |    ||||||  ||   |    |   | || ||||        
TGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAACCGCAGGACCGTAAACCGAGCCTACGGAGGTGTTTTATCAGGAGGAGCTGTTAGAGAAAGgtatgttgctcaaaaagtctttagatgtttttg--ttgaaaattttcttagttgaagtaaatttacagccatttattcatggtatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110426349|gb|EC992755.1|EC992755
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|110401727|gb|EC968344.1|EC968344
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|351029961|gb|FQ430703.1|FQ430703
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|71867924|gb|DT016979.1|DT016979
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|71875778|gb|DT024833.1|DT024833
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGG-AT-A----                         -AT--T-CGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|110696892|gb|EE073402.1|EE073402
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|33402492|gb|CF208119.1|CF208119
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCCTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|27582431|gb|CB005126.1|CB005126
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|110704730|gb|EE081740.1|EE081740
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|110694427|gb|EE071525.1|EE071525
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|110376594|gb|EC941653.1|EC941653
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|34544378|gb|CF512610.1|CF512610
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|34545525|gb|CF513757.1|CF513757
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|110399562|gb|EC966073.1|EC966073
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|110689386|gb|EE065575.1|EE065575
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|110693670|gb|EE070103.1|EE070103
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|30296475|gb|CB973269.1|CB973269
EST:     CCTATGGTGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|110402092|gb|EC968725.1|EC968725
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|71872787|gb|DT021842.1|DT021842
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|110728053|gb|EE103286.1|EE103286
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|110375579|gb|EC940580.1|EC940580
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|71871640|gb|DT020695.1|DT020695
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|30130884|gb|CB916223.1|CB916223
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|110404494|gb|EC969640.1|EC969640
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|110691699|gb|EE070097.1|EE070097
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|110702167|gb|EE080571.1|EE080571
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|110361458|gb|EC924931.1|EC924931
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGG-AT-A----                         -AT--T-CGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|34545438|gb|CF513670.1|CF513670
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|110387708|gb|EC952399.1|EC952399
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|110384235|gb|EC948660.1|EC948660
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|110397100|gb|EC962821.1|EC962821
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|110699945|gb|EE077421.1|EE077421
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTC----A-AGG-A-GA---G                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|110376077|gb|EC941118.1|EC941118
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGG-AT-A----                         -AT--T-CGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|34549520|gb|CF517752.1|CF517752
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
EST: gi|110413639|gb|EC979436.1|EC979436
EST:     CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCA-GG-GA-G-A-G-----                         GATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT
genomic: CCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatt ... actttttcagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAATACAAGAGGTCTAGATTGCCAAGGAACCGTAGGACTGTGAACCGGGCCTATGGAGGTGTTTTGTCGGGTGGTGCTGTCAGGGAGAGGTATGATCCTgtaaatgatttcaagtttatttcgtttcttaactgcactagttggggttttgattaataactttttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG