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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTTGGACGAGTGGCTAATAGGATTGGAGGCGCACAATTTACATTGAACGGAACCCACTATAAGCTAGTTGCTAATGACGGGAAAAACATGCTTCATGgtactttgttcttattctaacctaactggcaaaattctccaatcagcctggcaaaagaataaacattttccttgatttattccagctattttgttttactgaattttgttatatggatactag

Basic information

species Vitis vinifera
transcript Vv14s0108g00270.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110698658|gb|EE076404.1|EE076404
EST:     TGGAACCCACTATAAGCTAGTTGCTAATGACGGGAAAAACATGCTTCATG                         GCGGGCCTAAAGGATTCGGTAAAGTTGCTTGGAGAGTGAGTAAATATGAGA
genomic: CGGAACCCACTATAAGCTAGTTGCTAATGACGGGAAAAACATGCTTCATGgtactttgtt ... tggatactagGCGGGCCTAAAGGATTCGGTAAAGTTGCTTGGAGAGTGAGTAAATATGAGA
EST: gi|161709120|gb|FC058392.1|FC058392
EST:     CGGAACCCACTATAAGCTAGTTGCTAATGACGGGAAAAACATGCTTCATG                         GCGGGCCTAAAGGATTCGGTAAAGTTGCT
genomic: CGGAACCCACTATAAGCTAGTTGCTAATGACGGGAAAAACATGCTTCATGgtactttgtt ... tggatactagGCGGGCCTAAAGGATTCGGTAAAGTTGCT
EST: gi|110693694|gb|EE070148.1|EE070148
EST:     CGGAACCCACTATAAGCTAGTTGCTAATGACGGGAAAAACATGCTTCATG                         GCGGGCCTAAAGGATTCGGTAAAGTTGCTTGGAGAGTGAGTAAATATGAGA
genomic: CGGAACCCACTATAAGCTAGTTGCTAATGACGGGAAAAACATGCTTCATGgtactttgtt ... tggatactagGCGGGCCTAAAGGATTCGGTAAAGTTGCTTGGAGAGTGAGTAAATATGAGA