Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAGCTATAGGGAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAGgtgattaagtaccttagttgtggcttttttgaattctgcttctgaaatttctgagttggataattgttttcattcaattacggagatatcttatgcaacaacctgactttattcatgaaatatttgaccctgaatattctag

Basic information

species Vitis vinifera
transcript Vv14s0083g01050.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33402815|gb|CF208442.1|CF208442
EST:     GAGTACTTGAAACTGAAATCTAAGTTTGAGGCCCTTCAACGAACTCAGAG                         AAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCA
genomic: GAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAGgtgattaagt ... aatattctagAAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCA
EST: gi|33405261|gb|CF210888.1|CF210888
EST:     GAGTACTTGAAACTGAAATCTAAGTTTGAGGCCCTTCAACGAACTCAGAG                         AAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCA
genomic: GAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAGgtgattaagt ... aatattctagAAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCA
EST: gi|33402901|gb|CF208528.1|CF208528
EST:     GAGTACTTGAAACTGAAATCTAAGTTTGAGGCCCTTCAACGAACTCAGAG                         AAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCA
genomic: GAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAGgtgattaagt ... aatattctagAAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCA
EST: gi|110370316|gb|EC929381.1|EC929381
EST:     GAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAG                         AAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCA
genomic: GAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAGgtgattaagt ... aatattctagAAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCA
EST: gi|110379750|gb|EC944969.1|EC944969
EST:     CTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAG                         AAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCA
genomic: CTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAGgtgattaagt ... aatattctagAAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCA
EST: gi|110710966|gb|EE087623.1|EE087623
EST:     GAGTACTTGAAACTGAAATCTAAGTTTGAGGCCCTTCAACGAACTCAGAG                         AAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCA
genomic: GAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAGgtgattaagt ... aatattctagAAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCA
EST: gi|110398751|gb|EC965225.1|EC965225
EST:     GAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAG                         AAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCA
genomic: GAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAGgtgattaagt ... aatattctagAAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCA